Evidence map›Paper›PMID 21982822›Full record

ArticleThe Journal of biological chemistry2011

Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state.

Atsushi Inanobe, Atsushi Nakagawa, Yoshihisa Kurachi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Conduction through a narrow inward-rectifier KThe Journal of general physiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Atsushi InanobeDepartment of Pharmacology, Graduate School of Medicine, Osaka University, Osaka 565-0871, Japan; Center for Advanced Medical Engineering and Informatics, Osaka University, Osaka 565-0871, Japan. Electronic address: inanobe@pharma2.med.osaka-u.ac.jp.
Atsushi NakagawaLaboratory of Supramolecular Crystallography, Institute for Protein Research, Osaka University, Osaka 565-0871, Japan.
Yoshihisa KurachiDepartment of Pharmacology, Graduate School of Medicine, Osaka University, Osaka 565-0871, Japan; Center for Advanced Medical Engineering and Informatics, Osaka University, Osaka 565-0871, Japan. Electronic address: ykurachi@pharma2.med.osaka-u.ac.jp.
Osaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ion channels gate at membrane-embedded domains by changing their conformation along the ion conduction pathway. Inward rectifier K(+) (Kir) channels possess a unique extramembrane cytoplasmic domain that extends this pathway. However, the relevance and contribution of this domain to ion permeation remain unclear. By qualitative x-ray crystallographic analysis, we found that the pore in the cytoplasmic domain of Kir3.2 binds cations in a valency-dependent manner and does not allow the displacement of Mg(2+) by monovalent cations or spermine. Electrophysiological analyses revealed that the cytoplasmic pore of Kir3.2 selectively binds positively charged molecules and has a higher affinity for Mg(2+) when it has a low probability of being open. The selective blocking of chemical modification of the side chain of pore-facing residues by Mg(2+) indicates that the mode of binding of Mg(2+) is likely to be similar to that observed in the crystal structure. These results indicate that the Kir3.2 crystal structure has a closed conformation with a negative electrostatic field potential at the cytoplasmic pore, the potential of which may be controlled by conformational changes in the cytoplasmic domain to regulate ion diffusion along the pore.

Indexed as

AnimalsCations, DivalentCrystallography, X-RayG Protein-Coupled Inwardly-Rectifying Potassium ChannelsHEK293 CellsHumansMagnesiumMiceProtein Structure, TertiaryCations, DivalentG Protein-Coupled Inwardly-Rectifying Potassium ChannelsKcnj6 protein, mouseMagnesium

Identifiers

PMID21982822
PMCPMC3308888
OpenAlexW2045818085

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.