Evidence map›Paper›PMID 21981919›Full record

ArticleMolecular cell2011

A genome-wide screen identifies p97 as an essential regulator of DNA damage-dependent CDT1 destruction.

Malavika Raman, Courtney G Havens, Johannes C Walter, J Wade Harper

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 111 citations in OpenAlex.

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  16. Phospho-SerCancers · 2021
    Article
  17. Article
  18. Cdc48 cofactor Shp1 regulates signal-induced SCFProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Phospho-SerCell reports · 2020
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Malavika RamanDepartment of Cell Biology, Harvard Medical School, Boston, MA 01230, USA.
Courtney G Havens
Johannes C Walter
J Wade Harper
Harvard University · US

Funding

Ubiquitin Mediated Proteolysis and Cell Cycle ControlR01AG011085 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JEFFREY W HARPER · 1993 to 2026
$10.9M
SYSTEMATIC ANALYSIS OF THE DUB PROTEOMER01GM054137 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI HARPER, JEFFREY W · 1996 to 2012
$4.1M
The mechanism of vertebrate DNA replication terminationR01GM080676 · NIGMS · HARVARD MEDICAL SCHOOL · PI WALTER, JOHANNES · 2007 to 2019
$3.7M
SYSTEMATIC ANALYSIS OF PROTEOLYSIS PATHWAYS FOR CULLIN TARGETSR01GM070565 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI HARPER, JEFFREY W · 2005 to 2012
$2.6M
A Global Screen for Genes Regulating Cdt1 Turnover In Response To DNA DamageF32CA139885 · NCI · HARVARD MEDICAL SCHOOL · PI RAMAN, MALAVIKA · 2010 to 2012
$166k
Mechanism of PCNA-Dependent Cdt1 Destruction in S phaseF32GM082014 · NIGMS · HARVARD MEDICAL SCHOOL · PI HAVENS, COURTNEY G · 2007 to 2009
$148k
NCI NIH HHS F32 CA139885NCI NIH HHS F32CA139885NIA NIH HHS AG011085NIA NIH HHS R01 AG011085NIGMS NIH HHS F32 GM082014NIGMS NIH HHS F32GM082014NIGMS NIH HHS GM054137NIGMS NIH HHS GM070565NIGMS NIH HHS GM080676NIGMS NIH HHS R01 GM054137NIGMS NIH HHS R01 GM070565NIGMS NIH HHS R01 GM080676
6 · The paper itself

Abstract

Several proteins, including the replication licensing factor CDT1 and the histone methyltransferase SET8, are targeted for proteolysis during DNA replication and repair by the E3 ubiquitin ligase CRL4(CDT2). CRL4(CDT2) function is coupled to replication and repair because it only ubiquitinates substrates that associate with chromatin-bound PCNA. Here, we report a genome-wide siRNA screen that identifies multiple factors necessary for CDT1 destruction after UV irradiation. Among these, nucleotide excision repair factors promote CDT1 destruction due to a role in recruiting PCNA to damaged DNA. The COP9/Signalosome regulates CDT2 stability through CUL4 deneddylation. Finally, the p97 AAA(+)-ATPase and its cofactor UFD1 are required for proteasome-dependent removal of ubiquitinated CDT1 and SET8 from chromatin and their subsequent degradation both in vivo and in a Xenopus egg extract system in vitro. This study provides insight into and a resource for the further exploration of pathways that promote timely degradation of chromatin-associated CRL4(CDT2) substrates.

Indexed as

DNA DamageGene Expression RegulationAdenosine TriphosphatasesAnimalsCell Cycle ProteinsChromatinDNA-Binding ProteinsGenome, HumanHeLa CellsHistone-Lysine N-MethyltransferaseHumansNuclear ProteinsProteasome Endopeptidase ComplexRNA, Small InterferingUbiquitin-Protein LigasesValosin Containing ProteinAdenosine TriphosphatasesCDT1 protein, humanCdt1 protein, XenopusCell Cycle ProteinsChromatinDNA-Binding ProteinsDTL protein, humanHistone-Lysine N-MethyltransferaseKMT5A protein, humanNuclear ProteinsProteasome Endopeptidase ComplexRNA, Small InterferingUbiquitin-Protein LigasesValosin Containing ProteinXenopus Proteins

Identifiers

PMID21981919
PMCPMC3190166
OpenAlexW1988418140

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.