Evidence map›Paper›PMID 21980988›Full record

ArticleEnvironmental microbiology2012

Polyphyly of non-bioluminescent Vibrio fischeri sharing a lux-locus deletion.

M S Wollenberg, S P Preheim, M F Polz, E G Ruby

Abstract read
In one paragraph

Article in Environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Lighting the way: how theJournal of bacteriology · 2024
    Review
  3. Acquisition of bioluminescent trait by non-luminous organisms from luminous organisms through various origins.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
    Review
  4. Review
  5. Article
  6. Adaptation to pH stress byMicrobiology (Reading, England) · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

M S WollenbergDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI 53706-1521, USA.
S P Preheim
M F Polz
E G Ruby

Funding

GRADUATE TRAINING IN MOLECULAR BIOSCIENCEST32GM007215 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 1985 to 2018
$22.5M
VIBRIO VIRULENCE DETERMINANTS IN A BENIGN COLONIZATIONR01RR012294 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI RUBY, EDWARD G · 1996 to 2011
$6.4M
Microbial Pathogenesis &Host Responses Training ProgramT32AI055397 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KLEIN, BRUCE STEVEN · 2003 to 2024
$5.5M
Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
Resistance and resiliency in a natural host-microbe symbiosisR01GM099507 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RUBY, EDWARD G · 2012 to 2015
$1.4M
NCRR NIH HHS R01 RR012294NCRR NIH HHS R01 RR12294NIAID NIH HHS 2T32AI055397-07NIAID NIH HHS T32 AI055397NIGMS NIH HHS 5T32GM007215-35NIGMS NIH HHS R01 GM099507NIGMS NIH HHS T32 GM007215NIH HHS R01 OD011024
6 · The paper itself

Abstract

This study reports the first description and molecular characterization of naturally occurring, non-bioluminescent strains of Vibrio fischeri. These 'dark' V. fischeri strains remained non-bioluminescent even after treatment with both autoinducer and aldehyde, substrate additions that typically maximize light production in dim strains of luminous bacteria. Surprisingly, the entire lux locus (eight genes) was absent in over 97% of these dark V. fischeri strains. Although these strains were all collected from a Massachusetts (USA) estuary in 2007, phylogenetic reconstructions allowed us to reject the hypothesis that these newly described non-bioluminescent strains exhibit monophyly within the V. fischeri clade. These dark strains exhibited a competitive disadvantage against native bioluminescent strains when colonizing the light organ of the model V. fischeri host, the Hawaiian bobtail squid Euprymna scolopes. Significantly, we believe that the data collected in this study may suggest the first observation of a functional, parallel locus-deletion event among independent lineages of a non-pathogenic bacterial species.

Indexed as

Aliivibrio fischeriAnimalsBacterial ProteinsBase SequenceDecapodiformesGenes, BacterialLightLocus Control RegionLuminescent MeasurementsLuminescent ProteinsMassachusettsMolecular Sequence DataPhylogenySymbiosisBacterial ProteinsLuminescent Proteins

Identifiers

PMID21980988
PMCPMC3655796

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.