Evidence map›Paper›PMID 21976959›Full record

ArticleMolecular vision2011

Mutational screening of VSX1, SPARC, SOD1, LOX, and TIMP3 in keratoconus.

Patrizia De Bonis, Antonio Laborante, Costantina Pizzicoli, Raffaella Stallone, Raffaela Barbano, Costanza Longo, Emilio Mazzilli, Leopoldo Zelante, Luigi Bisceglia

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Molecular vision, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03071302 (Evaluation of Tomographic and Genetic Aspects of Keratoconus Patients Compared to Sounds Corneas), which is not on this map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03071302 nacompletednot on this mapstarted 2015, after this paper: background citation

Evaluation of Tomographic and Genetic Aspects of Keratoconus Patients Compared to Sounds Corneas

TypeinterventionalSponsorSao Jose do Rio Preto Medical SchoolRan2015 to 2016Enrolled210ConditionsKeratoconus, Keratoconus, Unspecified, BilateralArmsEVALUATION OF VSX1, SOD1, and TIMP3 genes
3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it, 107 citations in OpenAlex.

  1. Pooled it
  2. Review
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  5. Disease-CausingInternational journal of molecular sciences · 2024
    Article
  6. Article
  7. Clinical and genetic analysisFrontiers in genetics · 2023
    Article
  8. The Underlying Relationship between Keratoconus and Down Syndrome.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Patrizia De BonisUnità di Genetica Medica, IRCCS Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy.
Antonio Laborante
Costantina Pizzicoli
Raffaella Stallone
Raffaela Barbano
Costanza Longo
Emilio Mazzilli
Leopoldo Zelante
Luigi Bisceglia
Casa Sollievo della Sofferenza · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo evaluate the involvement of Visual System Homeobox 1 (VSX1), Secreted Protein Acidic and Rich in Cysteine (SPARC), Superoxide Dismutase 1 (SOD1), Lysyl Oxidase (LOX), and Tissue Inhibitor of Metalloproteinase 3 (TIMP3) in sporadic and familial keratoconus.

methodsMutational analysis of the five genes was performed by sequencing and fragment analysis in a large cohort of 302 Italian patients, with a diagnosis of keratoconus based on clinical examination and corneal topography. The variants identified in VSX1 and SPARC were also assessed in the available relatives of the probands.

resultsA novel mutation p.G239R and previously reported mutations were found in VSX1. Novel and already reported variants were identified in SPARC and SOD1, whose pathogenic significance has not been established. No pathogenic variants have been identified in LOX and TIMP3.

conclusionsMolecular analysis of the five genes in a cohort of 225 sporadic and 77 familial keratoconus cases confirms the possible pathogenic role of VSX1 though in a small number of patients; a possible involvement of LOX and TIMP3 could be excluded; and the role played by SOD1 and SPARC in determining the disease as not been definitively clarified. Further studies are required to identify other important genetic factors involved in the pathogenesis and progression of the disease that in the authors' opinion, and according with several authors, should be considered as a complex disease.

Indexed as

AdolescentAdultBase SequenceChildCohort StudiesCorneaCorneal TopographyDNA Mutational AnalysisEye ProteinsGenetic TestingHomeodomain ProteinsHumansItalyKeratoconusMiddle AgedMolecular Sequence DataEye ProteinsHomeodomain ProteinsOsteonectinProtein-Lysine 6-OxidaseSOD1 protein, humanSuperoxide DismutaseSuperoxide Dismutase-1TIMP3 protein, humanTissue Inhibitor of Metalloproteinase-3VSX1 protein, human

Identifiers

PMID21976959
PMCPMC3185016
OpenAlexW1543994696

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.