Evidence map›Paper›PMID 21976484›Full record

ArticlePlant physiology2011

Expression of Arabidopsis SHORT INTERNODES/STYLISH family genes in auxin biosynthesis zones of aerial organs is dependent on a GCC box-like regulatory element.

D Magnus Eklund, Izabela Cierlik, Veronika Ståldal, Andrea R Claes, Daniel Vestman, John Chandler, Eva Sundberg

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  8. Ectopic Expression ofInternational journal of molecular sciences · 2024
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  13. Article
  14. Genome-wide characterization of theFrontiers in plant science · 2022
    Article
  15. Casting the Net-Connecting Auxin Signaling to the Plant Genome.Cold Spring Harbor perspectives in biology · 2021
    Review
  16. Article
  17. Article
  18. Auxin and Flower Development: A Blossoming Field.Cold Spring Harbor perspectives in biology · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

D Magnus EklundUppsala BioCenter, Department of Plant Biology and Forest Genetics, Swedish University of Agricultural Sciences, SE-75007 Uppsala, Sweden.
Izabela Cierlik
Veronika Ståldal
Andrea R Claes
Daniel Vestman
John Chandler
Eva Sundberg
Swedish University of Agricultural Sciences · SEUniversity of Cologne · DEMonash University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxin/indole-3-acetic acid (IAA) biosynthesis in Arabidopsis (Arabidopsis thaliana) plays a major role in growth responses to developmental and genetic signals as well as to environmental stimuli. Knowledge of its regulation, however, remains rudimentary, and few proteins acting as transcriptional modulators of auxin biosynthesis have been identified. We have previously shown that alteration in the expression level of the SHORT INTERNODES/STYLISH (SHI/STY) family member STY1 affects IAA biosynthesis rates and IAA levels and that STY1 acts as a transcriptional activator of genes encoding auxin biosynthesis enzymes. Here, we have analyzed the upstream regulation of SHI/STY family members to gain further insight into transcriptional regulation of auxin biosynthesis. We attempted to modulate the normal expression pattern of STY1 by mutating a putative regulatory element, a GCC box, located in the proximal promoter region and conserved in most SHI/STY genes in Arabidopsis. Mutations in the GCC box abolish expression in aerial organs of the adult plant. We also show that induction of the transcriptional activator DORNRÖSCHEN-LIKE (DRNL) activates the transcription of STY1 and other SHI/STY family members and that this activation is dependent on a functional GCC box. Additionally, STY1 expression in the strong drnl-2 mutant or the drn drnl-1 puchi-1 triple mutant, carrying knockdown mutations in both DRNL and its close paralogue DRN as well as one of their closest homologs, PUCHI, was significantly reduced, suggesting that DRNL regulates STY1 during normal plant development and that several other genes might have redundant functions.

Indexed as

Amino Acids, CyclicArabidopsisArabidopsis ProteinsBase SequenceCarrier ProteinsCotyledonGene Expression Regulation, PlantIndoleacetic AcidsMutationNucleotide MotifsPlant Components, AerialPlant Growth RegulatorsPlant RootsPlants, Genetically ModifiedPromoter Regions, GeneticSeedlings1-aminocyclopropane-1-carboxylic acidAmino Acids, CyclicArabidopsis ProteinsCarrier ProteinsDRNL protein, ArabidopsisIndoleacetic AcidsPlant Growth RegulatorsPuchi protein, ArabidopsisSTY1 protein, ArabidopsisTranscription Factors

Identifiers

PMID21976484
PMCPMC3327175
OpenAlexW2166413338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.