Evidence map›Paper›PMID 21974968›Full record

ArticleBMC research notes2011

Microarray profiling reveals the integrated stress response is activated by halofuginone in mammary epithelial cells.

Yana G Kamberov, Jihoon Kim, Ralph Mazitschek, Winston P Kuo, Malcolm Whitman

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Halofuginone - the multifaceted molecule.Molecules (Basel, Switzerland) · 2015
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Yana G KamberovGenetics Department, Harvard Medical School, Boston, MA, USA. yana_kamberov@hms.harvard.edu.
Jihoon Kim
Ralph Mazitschek
Winston P Kuo
Malcolm Whitman
Harvard University · USBroad Institute · USUniversity of California, San Diego · US

Funding

MECHANISM OF ACTION OF HALOFUGINONE AS A NOVEL THERAPEUTICR01GM089885 · NIGMS · HARVARD MEDICAL SCHOOL · PI WHITMAN, MALCOLM R. · 2010 to 2013
$1.5M
NIGMS NIH HHS R01 GM089885
6 · The paper itself

Abstract

backgroundThe small molecule Halofuginone (HF) is a potent regulator of extracellular matrix (ECM ) gene expression and is unique in its therapeutic potential. While the basis for HF effects is unknown, inhibition of TGFβ signaling and activation of the amino acid restriction response (AAR) have been linked to HF transcriptional control of a number of ECM components and amelioration of fibrosis and alleviation of autoimmune disease by regulation of Th17 cell differentiation, respectively. The aim of this study was to generate a global expression profile of HF targets in epithelial cells to identify potential mediators of HF function in this cell type.

resultsWe report that HF modulation of the expression of the ECM remodeling protein Mmp13 in epithelial cells is separable from previously reported effects of HF on TGFβ signal inhibition, and use microarray expression analysis to correlate this with transcriptional responses characteristic of the Integrated Stress Response (ISR).

conclusionsOur findings suggest activation of the ISR may be a common mechanism underlying HF biological effects.

Identifiers

PMID21974968
PMCPMC3197508
OpenAlexW2100015089

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.