Evidence map›Paper›PMID 21971086›Full record

ArticleThe EMBO journal2012

Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast.

Suraiya A Ansari, Mythily Ganapathi, Joris J Benschop, Frank C P Holstege, Joseph T Wade, Randall H Morse

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it, 81 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Paralogs of thebioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Mediator Subunit Med15 Regulates Cell Morphology and Mating inJournal of fungi (Basel, Switzerland) · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Possible Role for Allelic Variation in YeastFrontiers in microbiology · 2021
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Suraiya A AnsariLaboratory of Molecular Genetics, Wadsworth Center, New York State Department of Health, Albany, NY 12201-0509, USA.
Mythily Ganapathi
Joris J Benschop
Frank C P Holstege
Joseph T Wade
Randall H Morse
New York State Department of Health · USUniversity Medical Center Utrecht · NLUniversity at Albany, State University of New York · USWadsworth Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The evolutionarily conserved Mediator complex is required for transcription of nearly all RNA Pol II-dependent promoters, with the tail module serving to recruit Mediator to active promoters in current models. However, transcriptional dependence on tail module subunits varies in a gene-specific manner, and the generality of the tail module requirement for transcriptional activation has not been explored. Here, we show that tail module subunits function redundantly to recruit Mediator to promoters in yeast, and transcriptome analysis shows stronger effects on genome-wide expression in a double-tail subunit deletion mutant than in single-subunit deletion mutants. Unexpectedly, TATA-containing and SAGA-dependent genes were much more affected by impairment of tail module function than were TFIID-dependent genes. Consistent with this finding, Mediator and preinitiation complex association with SAGA-dependent promoters is substantially reduced in gal11/med15Δ med3Δ yeast, whereas association of TBP, Pol II, and other Mediator modules with TFIID-dependent genes is largely independent of the tail module. Thus, we have identified a connection between the Mediator tail module and the division of promoter dependence between TFIID and SAGA.

Indexed as

Cyclin-Dependent KinasesGene Expression Regulation, FungalGenome, FungalMediator ComplexPromoter Regions, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTrans-ActivatorsTranscription Factor TFIIDTranscriptomeCyclin-Dependent KinasesGAL11 protein, S cerevisiaeMED2 protein, S cerevisiaeMediator ComplexPGD1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeTATA-Box Binding ProteinTrans-ActivatorsTranscription Factor TFIID

Identifiers

PMID21971086
PMCPMC3252575
OpenAlexW2130941766

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.