Evidence map›Paper›PMID 21970977›Full record

ArticlePsychiatric genetics2012

Multiple genes in the 15q13-q14 chromosomal region are associated with schizophrenia.

Sarah H Stephens, Alexis Franks, Ralph Berger, Milda Palionyte, Tasha E Fingerlin, Brandie Wagner, Judith Logel, Ann Olincy, Randal G Ross, Robert Freedman and 1 more

Open access · greenAbstract read
In one paragraph

Article in Psychiatric genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Association Analysis Between Common Variants of theGenetic testing and molecular biomarkers · 2020
    Pooled it
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  4. A novel knockout mouse for the small EDRK-rich factor 2 (Serf2) showing developmental and other deficits.Mammalian genome : official journal of the International Mammalian Genome Society · 2021
    Article
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  6. LINE1 insertions as a genomic risk factor for schizophrenia: Preliminary evidence from an affected family.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Sarah H StephensDepartment of Psychiatry, University of Colorado Denver, Colorado 80045, USA.
Alexis Franks
Ralph Berger
Milda Palionyte
Tasha E Fingerlin
Brandie Wagner
Judith Logel
Ann Olincy
Randal G Ross
Robert Freedman
Sherry Leonard
University of Colorado Denver · USDenver VA Medical Center · USVeterans Health Administration · US

Funding

STATISTICAL GENETICS AND TREATMENT ANALYSISP50MH086383 · NIMH · UNIVERSITY OF COLORADO DENVER · PI FREEDMAN, ROBERT R · 2009 to 2013
$10.6M
PHARMACOLOGY OF NICOTINIC RECEPTORSP50MH068582 · NIMH · UNIVERSITY OF COLORADO DENVER · PI FREEDMAN, ROBERT · 2004 to 2008
$9.4M
Regulation of Alpha 7 Nicotinic Receptor Assembly in Human SmokersR01DA009457 · NIDA · UNIVERSITY OF COLORADO DENVER · PI LEONARD, SHERRY · 1995 to 2011
$2.8M
Regulation of the Human a7 Nicotinic Receptor Gene in SchizophreniaR01MH081177 · NIMH · UNIVERSITY OF COLORADO DENVER · PI LEONARD, SHERRY · 2007 to 2011
$1.7M
NIDA NIH HHS DA009457NIDA NIH HHS R01 DA009457NIMH NIH HHS MH068582NIMH NIH HHS MH081177NIMH NIH HHS P50 MH068582NIMH NIH HHS P50 MH086383NIMH NIH HHS R01 MH081177
6 · The paper itself

Abstract

objectiveThe chromosomal region, 15q13-q14, including the α7 nicotinic acetylcholine receptor gene, CHRNA7, is a replicated region for schizophrenia. This study fine-mapped genes at 15q13-q14 to determine whether the association is unique to CHRNA7.

methodsFamily-based and case-control association studies were performed on Caucasian-non-Hispanic and African-American individuals from 120 families as well as 468 individual patients with schizophrenia and 144 well-characterized controls. Single-nucleotide polymorphism (SNP) markers were genotyped, and association analyses carried out for the outcomes of schizophrenia, smoking, and smoking in schizophrenia.

resultsThree genes were associated with schizophrenia in both ethnic populations: TRPM1, KLF13, and RYR3. Two SNPs in CHRNA7 were associated with schizophrenia in African-Americans, and a second SNP in CHRNA7 was significant for an association with smoking and smoking in schizophrenia in Caucasians.

conclusionResults of these studies support association of the 15q13-q14 region with schizophrenia. The broad positive association suggests that more than one 15q gene may be contributing to the disorder, either in combination or through a regulatory mechanism.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseBlack or African AmericanCase-Control StudiesChromosomes, Human, Pair 15FamilyGenetic LinkageGenetic MarkersGenotyping TechniquesHispanic or LatinoHumansMicrosatellite RepeatsOdds RatioPhysical Chromosome MappingPolymorphism, Single NucleotideSchizophreniaGenetic Markers

Identifiers

PMID21970977
PMCPMC3878876
OpenAlexW1984526928

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.