ArticleBioinformatics (Oxford, England)2011
ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.
Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
26 citing papers in PubMed.
- Navigating Transcriptomic Connectivity Mapping Workflows to Link Chemicals with Bioactivities.Chemical research in toxicology · 2022Review
- OMiCC: An expanded and enhanced platform for meta-analysis of public gene expression data.STAR protocols · 2022Article
- Article
- Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients.Genome biology · 2022Article
- Comparison of Approaches for Determining Bioactivity Hits from High-Dimensional Profiling Data.SLAS discovery : advancing life sciences R & D · 2021Article
- Stems cells, big data and compendium-based analyses for identifying cell types, signalling pathways and gene regulatory networks.Biophysical reviews · 2019Review
- Vitamin D Receptor Signaling and Cancer.Endocrinology and metabolism clinics of North America · 2017Review
- A question of fate.PLoS biology · 2017Article
- EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2017Article
- Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.Nature communications · 2016Article
- Retrieving relevant time-course experiments: a study on Arabidopsis microarrays.IET systems biology · 2016Article
- Vitamin D receptor and RXR in the post-genomic era.Journal of cellular physiology · 2015Review
- The Effect of Statins on Blood Gene Expression in COPD.PloS one · 2015Article
- Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.Bioinformatics and biology insights · 2015Review
- Database of Gene Co-Regulation (dGCR): A Web Tool for Analysing Patterns of Gene Co-regulation across Publicly Available Expression Data.Journal of genomics · 2015Article
- A genomic signature approach to rescue ΔF508-cystic fibrosis transmembrane conductance regulator biosynthesis and function.American journal of respiratory cell and molecular biology · 2014Article
- Principles and methods of integrative genomic analyses in cancer.Nature reviews. Cancer · 2014Review
- Unifying immunology with informatics and multiscale biology.Nature immunology · 2014Review
- Neuregulin autocrine signaling promotes self-renewal of breast tumor-initiating cells by triggering HER2/HER3 activation.Cancer research · 2014Article
- Vitamin D and the RNA transcriptome: more than mRNA regulation.Frontiers in physiology · 2014Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
summaryWe introduce ProfileChaser, a web server that allows for querying the Gene Expression Omnibus based on genome-wide patterns of differential expression. Using a novel, content-based approach, ProfileChaser retrieves expression profiles that match the differentially regulated transcriptional programs in a user-supplied experiment. This analysis identifies statistical links to similar expression experiments from the vast array of publicly available data on diseases, drugs, phenotypes and other experimental conditions. AVAILABILITY: http://profilechaser.stanford.edu CONTACT: abutte@stanford.edu SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.