ArticleJournal of proteome research2011
jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions.
Article in Journal of proteome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
9 citing papers in PubMed.
- Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.Journal of proteome research · 2023Review
- Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.Journal of proteome research · 2017Article
- Development of data representation standards by the human proteome organization proteomics standards initiative.Journal of the American Medical Informatics Association : JAMIA · 2015Review
- jmzTab: a java interface to the mzTab data standard.Proteomics · 2014Article
- A tutorial for software development in quantitative proteomics using PSI standard formats.Biochimica et biophysica acta · 2014Review
- Controlled vocabularies and ontologies in proteomics: overview, principles and practice.Biochimica et biophysica acta · 2014Review
- Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.Biochimica et biophysica acta · 2014Review
- File formats commonly used in mass spectrometry proteomics.Molecular & cellular proteomics : MCP · 2012Article
- TraML--a standard format for exchange of selected reaction monitoring transition lists.Molecular & cellular proteomics : MCP · 2012Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
We here present jTraML, a Java API for the Proteomics Standards Initiative TraML data standard. The library provides fully functional classes for all elements specified in the TraML XSD document, as well as convenient methods to construct controlled vocabulary-based instances required to define SRM transitions. The use of jTraML is demonstrated via a two-way conversion tool between TraML documents and vendor specific files, facilitating the adoption process of this new community standard. The library is released as open source under the permissive Apache2 license and can be downloaded from http://jtraml.googlecode.com . TraML files can also be converted online at http://iomics.ugent.be/jtraml .
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.