Evidence map›Paper›PMID 21965685›Full record

ArticleThe Journal of biological chemistry2011

External Ba2+ block of the two-pore domain potassium channel TREK-1 defines conformational transition in its selectivity filter.

Xiao-Yun Ma, Jin-Mei Yu, Shu-Zhuo Zhang, Xiao-Yan Liu, Bao-Hong Wu, Xiao-Li Wei, Jia-Qing Yan, Hong-Liang Sun, Hai-Tao Yan, Jian-Quan Zheng

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The two-pore KAmerican journal of physiology. Heart and circulatory physiology · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. TOK channels use the two gates in classical KFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Contribution of two-pore KAmerican journal of physiology. Heart and circulatory physiology · 2017
    Article
  19. Article
  20. Myometrial relaxation of mice via expression of two pore domain acid sensitive K(+) (TASK-2) channels.The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xiao-Yun MaDepartment of Biochemical Pharmacology, Beijing Institute of Pharmacology and Toxicology, Beijing 100850, China.
Jin-Mei Yu
Shu-Zhuo Zhang
Xiao-Yan Liu
Bao-Hong Wu
Xiao-Li Wei
Jia-Qing Yan
Hong-Liang Sun
Hai-Tao Yan
Jian-Quan Zheng

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TREK-1 is a member of the two-pore domain potassium channel family that is known as a leak channel and plays a key role in many physiological and pathological processes. The conformational transition of the selectivity filter is considered as an effective strategy for potassium channels to control the course of potassium efflux. It is well known that TREK-1 is regulated by a large volume of extracellular and intracellular signals. However, until now, little was known about the selectivity filter gating mechanism of the channel. In this research, it was found that Ba(2+) blocked the TREK-1 channel in a concentration- and time-dependent manner. A mutagenesis analysis showed that overlapped binding of Ba(2+) at the assumed K(+) binding site 4 (S4) within the selectivity filter was responsible for the inhibitory effects on TREK-1. Then, Ba(2+) was used as a probe to explore the conformational transition in the selectivity filter of the channel. It was confirmed that collapsed conformations were induced by extracellular K(+)-free and acidification at the selectivity filters, leading to nonconductive to permeable ions. Further detailed characterization demonstrated that the two conformations presented different properties. Additionally, the N-terminal truncated isoform (ΔN41), a product derived from alternative translation initiation, was identified as a constitutively nonconductive variant. Together, these results illustrate the important role of selectivity filter gating in the regulation of TREK-1 by the extracellular K(+) and proton.

Indexed as

AnimalsBariumBinding SitesCations, DivalentCations, MonovalentDose-Response Relationship, DrugHEK293 CellsHumansIon Channel GatingIon TransportMutagenesisPotassiumPotassium Channel BlockersPotassium Channels, Tandem Pore DomainProtein IsoformsProtein Structure, TertiaryBariumCations, DivalentCations, MonovalentPotassiumPotassium Channel Blockerspotassium channel protein TREK-1Potassium Channels, Tandem Pore DomainProtein Isoforms

Identifiers

PMID21965685
PMCPMC3220548

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.