Evidence map›Paper›PMID 21965542›Full record

ArticleNucleic acids research2011

Structural basis for nematode eIF4E binding an m(2,2,7)G-Cap and its implications for translation initiation.

Weizhi Liu, Marzena Jankowska-Anyszka, Karolina Piecyk, Laura Dickson, Adam Wallace, Anna Niedzwiecka, Janusz Stepinski, Ryszard Stolarski, Edward Darzynkiewicz, Jeffrey Kieft and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
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  12. Distinct features of cap binding by eIF4E1b proteins.Journal of molecular biology · 2015
    Article
  13. Article
  14. Article
  15. Article
  16. The oncogene eIF4E: using biochemical insights to target cancer.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2013
    Review
  17. eIF4E3 acts as a tumor suppressor by utilizing an atypical mode of methyl-7-guanosine cap recognition.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Weizhi LiuDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Marzena Jankowska-Anyszka
Karolina Piecyk
Laura Dickson
Adam Wallace
Anna Niedzwiecka
Janusz Stepinski
Ryszard Stolarski
Edward Darzynkiewicz
Jeffrey Kieft
Rui Zhao
David N M Jones
Richard E Davis
University of Warsaw · PLPolish Academy of Sciences · PLUniversity of Colorado Denver · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
IN VIVO ANALYSIS OF SL ADDITION IN ASCARIS EMBRYOSR01AI049558 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DAVIS, RICHARD E. · 2000 to 2015
$4.8M
Structural Analysis of Helminth mRNA Cap-Binding ProteinsR03AI080805 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DAVIS, RICHARD E. · 2009 to 2010
$153k
Howard Hughes Medical Institute 55005604NCI NIH HHS P30 CA046934NIAID NIH HHS AI049558NIAID NIH HHS AI080805NIAID NIH HHS R01 AI049558NIAID NIH HHS R03 AI080805
6 · The paper itself

Abstract

Metazoan spliced leader (SL) trans-splicing generates mRNAs with an m(2,2,7)G-cap and a common downstream SL RNA sequence. The mechanism for eIF4E binding an m²²⁷G-cap is unknown. Here, we describe the first structure of an eIF4E with an m(2,2,7)G-cap and compare it to the cognate m⁷G-eIF4E complex. These structures and Nuclear Magnetic Resonance (NMR) data indicate that the nematode Ascaris suum eIF4E binds the two different caps in a similar manner except for the loss of a single hydrogen bond on binding the m(2,2,7)G-cap. Nematode and mammalian eIF4E both have a low affinity for m(2,2,7)G-cap compared with the m⁷G-cap. Nematode eIF4E binding to the m⁷G-cap, m(2,2,7)G-cap and the m(2,2,7)G-SL 22-nt RNA leads to distinct eIF4E conformational changes. Additional interactions occur between Ascaris eIF4E and the SL on binding the m(2,2,7)G-SL. We propose interactions between Ascaris eIF4E and the SL impact eIF4G and contribute to translation initiation, whereas these interactions do not occur when only the m(2,2,7)G-cap is present. These data have implications for the contribution of 5'-UTRs in mRNA translation and the function of different eIF4E isoforms.

Indexed as

Peptide Chain Initiation, TranslationalAnimalsAscaris suumDinucleoside PhosphatesEukaryotic Initiation Factor-4EHelminth ProteinsModels, MolecularProtein BindingProtein ConformationRNA Cap AnalogsRNA, Spliced Leader7-methyl-diguanosine triphosphateDinucleoside PhosphatesEukaryotic Initiation Factor-4EHelminth ProteinsRNA Cap AnalogsRNA, Spliced Leader

Identifiers

PMID21965542
PMCPMC3203607
OpenAlexW2147563857

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.