Evidence map›Paper›PMID 21965408›Full record

ArticleApplied and environmental microbiology2011

High ethanol titers from cellulose by using metabolically engineered thermophilic, anaerobic microbes.

D Aaron Argyros, Shital A Tripathi, Trisha F Barrett, Stephen R Rogers, Lawrence F Feinberg, Daniel G Olson, Justine M Foden, Bethany B Miller, Lee R Lynd, David A Hogsett and 1 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed.

  1. Article
  2. Article
  3. EngineeringMetabolic engineering communications · 2026
    Article
  4. Article
  5. Review
  6. EngineeringbioRxiv : the preprint server for biology · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Extremophiles in a changing world.Extremophiles : life under extreme conditions · 2024
    Review
  14. Ethanol tolerance in engineered strains of Clostridium thermocellum.Biotechnology for biofuels and bioproducts · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

D Aaron ArgyrosMascoma Corporation, 67 Etna Road, Suite 300, Lebanon, NH 03766, USA.
Shital A Tripathi
Trisha F Barrett
Stephen R Rogers
Lawrence F Feinberg
Daniel G Olson
Justine M Foden
Bethany B Miller
Lee R Lynd
David A Hogsett
Nicky C Caiazza

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This work describes novel genetic tools for use in Clostridium thermocellum that allow creation of unmarked mutations while using a replicating plasmid. The strategy employed counter-selections developed from the native C. thermocellum hpt gene and the Thermoanaerobacterium saccharolyticum tdk gene and was used to delete the genes for both lactate dehydrogenase (Ldh) and phosphotransacetylase (Pta). The Δldh Δpta mutant was evolved for 2,000 h, resulting in a stable strain with 40:1 ethanol selectivity and a 4.2-fold increase in ethanol yield over the wild-type strain. Ethanol production from cellulose was investigated with an engineered coculture of organic acid-deficient engineered strains of both C. thermocellum and T. saccharolyticum. Fermentation of 92 g/liter Avicel by this coculture resulted in 38 g/liter ethanol, with acetic and lactic acids below detection limits, in 146 h. These results demonstrate that ethanol production by thermophilic, cellulolytic microbes is amenable to substantial improvement by metabolic engineering.

Indexed as

Acetivibrio thermocellusBacteria, AnaerobicCelluloseDNA, BacterialEthanolFermentationGene DeletionGenetic EngineeringMetabolic Networks and PathwaysMolecular Sequence DataOrganisms, Genetically ModifiedPlasmidsRecombination, GeneticSequence Analysis, DNAThermoanaerobacteriumCelluloseDNA, BacterialEthanol

Identifiers

PMID21965408
PMCPMC3233045

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.