Evidence map›Paper›PMID 21964532›Full record

ArticleJournal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer2011

Identifying inhibitors of epithelial-mesenchymal transition by connectivity map-based systems approach.

Ajaya Kumar Reka, Rork Kuick, Himabindu Kurapati, Theodore J Standiford, Gilbert S Omenn, Venkateshwar G Keshamouni

Open access · greenAbstract read
In one paragraph

Article in Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 63 citations in OpenAlex.

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  19. FSIP1 binds HER2 directly to regulate breast cancer growth and invasiveness.Proceedings of the National Academy of Sciences of the United States of America · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ajaya Kumar RekaDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Medical Center, Ann Arbor, Michigan 48109, USA.
Rork Kuick
Himabindu Kurapati
Theodore J Standiford
Gilbert S Omenn
Venkateshwar G Keshamouni
University of Michigan · US

Funding

Regulation of Tumor Associated Macrophages by TGF-betaR01CA132571 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KESHAMOUNI, VENKATESHWAR G · 2008 to 2012
$1.4M
NCI NIH HHS R01 CA132571
6 · The paper itself

Abstract

backgroundAcquisition of mesenchymal phenotype by epithelial cells by means of epithelial-mesenchymal transition (EMT) is considered as an early event in the multistep process of tumor metastasis. Therefore, inhibition of EMT might be a rational strategy to prevent metastasis.

methodsUsing the global gene expression profile from a cell culture model of transforming growth factor-β (TGF-β)-induced EMT, we identified potential EMT inhibitors. We used a publicly available database (www.broad.mit.edu/cmap) comprising gene expression profiles obtained from multiple different cell lines in response to various drugs to derive negative correlations to EMT gene expression profile using Connectivity Map, a pattern matching tool.

resultsExperimental validation of the identified compounds showed rapamycin as a novel inhibitor of TGF-β signaling along with 17-AAG, a known modulator of TGF-β pathway. Both of these compounds completely blocked EMT and the associated migratory and invasive phenotype. The other identified compound, LY294002, demonstrated a selective inhibition of mesenchymal markers, cell migration and invasion, without affecting the loss of E-cadherin expression or Smad phosphorylation.

conclusionsOur data reveal that rapamycin is a novel modulator of TGF-β signaling, and along with 17-AAG and LY294002, could be used as therapeutic agent for inhibiting EMT. This study demonstrates the potential of a systems approach in identifying novel modulators of a complex biological process.

Indexed as

AdenocarcinomaAdenocarcinoma, Bronchiolo-AlveolarBenzoquinonesBiomarkers, TumorBlotting, WesternCadherinsCell MovementChromonesEnzyme InhibitorsEpithelial-Mesenchymal TransitionGene Expression ProfilingHSP90 Heat-Shock ProteinsHumansImmunosuppressive AgentsLactams, MacrocyclicLung Neoplasms2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-oneBenzoquinonesBiomarkers, TumorCadherinsChromonesEnzyme InhibitorsHSP90 Heat-Shock ProteinsImmunosuppressive AgentsLactams, MacrocyclicMorpholinesPhosphoinositide-3 Kinase InhibitorsSirolimusSmad ProteinstanespimycinTransforming Growth Factor beta

Identifiers

PMID21964532
PMCPMC3196823
OpenAlexW2066548087

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.