Evidence map›Paper›PMID 21963820›Full record

ArticlePlant physiology2011

Identification of quantitative trait loci controlling gene expression during the innate immunity response of soybean.

Oswaldo Valdés-López, Sandra Thibivilliers, Jing Qiu, Wayne Wenzhong Xu, Tran H N Nguyen, Marc Libault, Brandon H Le, Robert B Goldberg, Curtis B Hill, Glen L Hartman and 2 more

Abstract read
In one paragraph

Article in Plant physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Variation in Gene Expression between TwoPlants (Basel, Switzerland) · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Genetic dissection of the maize (Zea mays L.) MAMP response.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Oswaldo Valdés-LópezDepartment of Statistics, University of Missouri, Columbia, Missouri 65211, USA.
Sandra Thibivilliers
Jing Qiu
Wayne Wenzhong Xu
Tran H N Nguyen
Marc Libault
Brandon H Le
Robert B Goldberg
Curtis B Hill
Glen L Hartman
Brian Diers
Gary Stacey

Funding

Training Grant in Genomic Analysis and InterpretationT32HG002536 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Valerie A Arboleda, Harold Pimentel · 2002 to 2026
$8.6M
NHGRI NIH HHS T32 HG002536
6 · The paper itself

Abstract

Microbe-associated molecular pattern-triggered immunity (MTI) is an important component of the plant innate immunity response to invading pathogens. However, most of our knowledge of MTI comes from studies of model systems with relatively little work done with crop plants. In this work, we report on variation in both the microbe-associated molecular pattern-triggered oxidative burst and gene expression across four soybean (Glycine max) genotypes. Variation in MTI correlated with the level of pathogen resistance for each genotype. A quantitative trait locus analysis on these traits identified four loci that appeared to regulate gene expression during MTI in soybean. Likewise, we observed that both MTI variation and pathogen resistance were quantitatively inherited. The approach utilized in this study may have utility for identifying key resistance loci useful for developing improved soybean cultivars.

Indexed as

AscomycotaGene Expression ProfilingGene Expression Regulation, PlantGenotypeGlycine maxHost-Pathogen InteractionsOligonucleotide Array Sequence AnalysisPhenotypePlant DiseasesPlant ImmunityPlant LeavesPseudomonas syringaeQuantitative Trait LociReceptors, Pattern RecognitionRespiratory BurstRNA, PlantReceptors, Pattern RecognitionRNA, Plant

Identifiers

PMID21963820
PMCPMC3327182

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.