Evidence map›Paper›PMID 21963537›Full record

ArticleDevelopmental biology2011

Trachealess (Trh) regulates all tracheal genes during Drosophila embryogenesis.

SeYeon Chung, Cy Chavez, Deborah J Andrew

Abstract read
In one paragraph

Article in Developmental biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 55 citations in OpenAlex.

  1. Pri micropeptide functions as a cell-intrinsic timer controlling the transient phase of cell fate induction.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. The dynamics of tubulogenesis in development and disease.Development (Cambridge, England) · 2025
    Review
  3. Article
  4. Mechanisms of NaFrontiers in physiology · 2022
    Review
  5. Article
  6. A Matrix Metalloproteinase Mediates Tracheal Development inInternational journal of molecular sciences · 2021
    Article
  7. Article
  8. Dual oxidase enables insect gut symbiosis by mediating respiratory network formation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. A hemipteran insect reveals new genetic mechanisms and evolutionary insights into tracheal system development.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Comparative Expression Profiling of Wild TypeFrontiers in physiology · 2019
    Article
  15. Article
  16. Review
  17. Origin and diversification of wings: Insights from a neopteran insect.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

SeYeon ChungDepartment of Cell Biology, The Johns Hopkins University School of Medicine, 725 N. Wolfe Street, Baltimore, MD 21205–2196, USA
Cy Chavez
Deborah J Andrew
Johns Hopkins University · US

Funding

TRACHEALESS AND EMBRYONIC TUBE FORMATIONR01DE012873 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI ANDREW, DEBORAH J · 1999 to 2015
$5.2M
Role of Trachealess in embryonic tube formationR56DE012873 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI ANDREW, DEBORAH J · 2016 to 2016
$468k
COPAS SELECT Embryo SorterS10RR025477 · NCRR · JOHNS HOPKINS UNIVERSITY · PI ANDREW, DEBORAH J · 2009 to 2009
$192k
NCRR NIH HHS 1S10RR25477NCRR NIH HHS S10 RR025477NIDCR NIH HHS DE012873NIDCR NIH HHS R01 DE012873
6 · The paper itself

Abstract

The Drosophila trachea is a branched tubular epithelia that transports oxygen and other gases. trachealess (trh), which encodes a bHLH-PAS transcription factor, is among the first genes to be expressed in the cells that will form the trachea. In the absence of trh, tracheal cells fail to invaginate to form tubes and remain on the embryo surface. Expression of many tracheal-specific genes depends on trh, but all of the known targets have relatively minor phenotypes compared to loss of trh, suggesting that there are additional targets. To identify uncharacterized transcriptional targets of Trh and to further understand the role of Trh in embryonic tracheal formation, we performed an in situ hybridization screen using a library of ~100 tracheal-expressed genes identified by the Berkeley Drosophila Genome Project (BDGP). Surprisingly, expression of every tracheal gene we tested was dependent on Trh, suggesting a major role for Trh in activation and maintenance of tracheal gene expression. A re-examination of the interdependence of the known early-expressed transcription factors, including trh, ventral veinless (vvl) and knirps/knirps-related (kni/knrl), suggests a new model for how gene expression is controlled in the trachea, with trh regulating expression of vvl and kni, but not vice versa. A pilot screen for the targets of Vvl and Kni/Knrl revealed that Vvl and Kni have only minor roles compared to Trh. Finally, genome-wide microarray experiments identified additional Trh targets and revealed that a variety of biological processes are affected by the loss of trh.

Indexed as

Genes, InsectAlternative SplicingAmino Acid SequenceAnimalsDrosophila melanogasterDrosophila ProteinsGene Expression Regulation, DevelopmentalGene Knockout TechniquesGenome-Wide Association StudyHomeostasisIn Situ Hybridization, FluorescenceMolecular Sequence DataPOU Domain FactorsRepressor ProteinsRNA, MessengerSequence Homology, Amino AcidDrosophila Proteinskni protein, DrosophilaPOU Domain FactorsRepressor ProteinsRNA, MessengerTranscription Factorstrh protein, Drosophilavvl protein, Drosophila

Identifiers

PMID21963537
PMCPMC3215829
OpenAlexW2003738336

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.