Evidence map›Paper›PMID 21961587›Full record

ArticleBiophysical journal2011

Molecular mapping of general anesthetic sites in a voltage-gated ion channel.

Annika F Barber, Qiansheng Liang, Cristiano Amaral, Werner Treptow, Manuel Covarrubias

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Review
  6. Protonation state of inhibitors determines interaction sites within voltage-gated sodium channels.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Gambierol and n-alkanols inhibit Shaker Kv channel via distinct binding sites outside the K(+) pore.Toxicon : official journal of the International Society on Toxinology · 2016
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Modulation of a voltage-gated Na+ channel by sevoflurane involves multiple sites and distinct mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  18. Article
  19. Article
  20. Novel activation of voltage-gated K(+) channels by sevoflurane.The Journal of biological chemistry · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Annika F BarberDepartment of Neuroscience, Jefferson Medical College of Thomas Jefferson University, Philadelphia, Pennsylvania, USA.
Qiansheng Liang
Cristiano Amaral
Werner Treptow
Manuel Covarrubias
Thomas Jefferson University · USUniversidade de Brasília · BR

Funding

Alcohol Tissue InjuryT32AA007463 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI HOEK, JOANNES B, VADIGEPALLI, RAJANIKANTH · 1985 to 2021
$9.1M
MAPPING THE ALCOHOL SITE OF A NEURONAL POTASSIUM CHANNELR01AA010615 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI COVARRUBIAS, MANUEL L · 1997 to 2011
$2.2M
NIAAA NIH HHS R01 AA010615NIAAA NIH HHS T32 AA007463
6 · The paper itself

Abstract

Several voltage-gated ion channels are modulated by clinically relevant doses of general anesthetics. However, the structural basis of this modulation is not well understood. Previous work suggested that n-alcohols and inhaled anesthetics stabilize the closed state of the Shaw2 voltage-gated (Kv) channel (K-Shaw2) by directly interacting with a discrete channel site. We hypothesize that the inhibition of K-Shaw2 channels by general anesthetics is governed by interactions between binding and effector sites involving components of the channel's activation gate. To investigate this hypothesis, we applied Ala/Val scanning mutagenesis to the S4-S5 linker and the post-PVP S6 segment, and conducted electrophysiological analysis to evaluate the energetic impact of the mutations on the inhibition of the K-Shaw2 channel by 1-butanol and halothane. These analyses identified residues that determine an apparent binding cooperativity and residue pairs that act in concert to modulate gating upon anesthetic binding. In some instances, due to their critical location, key residues also influence channel gating. Complementing these results, molecular dynamics simulations and in silico docking experiments helped us visualize possible anesthetic sites and interactions. We conclude that the inhibition of K-Shaw2 by general anesthetics results from allosteric interactions between distinct but contiguous binding and effector sites involving inter- and intrasubunit interfaces.

Indexed as

Molecular Dynamics Simulation1-ButanolAmino Acid SequenceAnesthetics, GeneralComputational BiologyDose-Response Relationship, DrugElectrophysiological PhenomenaHalothaneIon Channel GatingMolecular Sequence DataMutagenesisMutationPotassium Channel BlockersProtein Structure, SecondaryShaw Potassium Channels1-ButanolAnesthetics, GeneralHalothanePotassium Channel BlockersShaw Potassium Channels

Identifiers

PMID21961587
PMCPMC3183804
OpenAlexW1983915711

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.