ArticleDatabase : the journal of biological databases and curation2011
Tripal: a construction toolkit for online genome databases.
Article in Database : the journal of biological databases and curation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
51 citing papers in PubMed.
- CottonGen 2025: a knowledgebase for cotton genomics, genetics, and breeding research.Genetics · 2026Article
- Building resource-efficient community databases using open-source software.Database : the journal of biological databases and curation · 2025Article
- OysterDB: A Genome Database for Ostreidae.Marine biotechnology (New York, N.Y.) · 2024Article
- Collecting and managing in situ banana genetic resources information (Musa spp.) using online resources and citizen science.Database : the journal of biological databases and curation · 2024Article
- FoPGDB: a pangenome database of Fusarium oxysporum, a cross-kingdom fungal pathogen.Database : the journal of biological databases and curation · 2024Article
- Building a community-driven bioinformatics platform to facilitateGigaByte (Hong Kong, China) · 2024Article
- Novel insights into the mechanism(s) of silicon-induced drought stress tolerance in lentil plants revealed by RNA sequencing analysis.BMC plant biology · 2023Article
- PearMODB: a multiomics database for pear (Pyrus) genomics, genetics and breeding study.Database : the journal of biological databases and curation · 2023Article
- CuGenDBv2: an updated database for cucurbit genomics.Nucleic acids research · 2023Article
- Comparative genome analysis of plant ascomycete fungal pathogens with different lifestyles reveals distinctive virulence strategies.BMC genomics · 2022Article
- The banana genome hub: a community database for genomics in the Musaceae.Horticulture research · 2022Article
- CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research.Plants (Basel, Switzerland) · 2021Article
- The United States Swine Pathogen Database: integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine.Database : the journal of biological databases and curation · 2021Article
- Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases.Briefings in bioinformatics · 2021Article
- CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa.Database : the journal of biological databases and curation · 2020Article
- JBrowse Connect: A server API to connect JBrowse instances and users.PLoS computational biology · 2020Article
- Article
- Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases.Database : the journal of biological databases and curation · 2020Article
- Omics Potential in Herbicide-Resistant Weed Management.Plants (Basel, Switzerland) · 2019Review
- Genome-wide association mapping of date palm fruit traits.Nature communications · 2019Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
As the availability, affordability and magnitude of genomics and genetics research increases so does the need to provide online access to resulting data and analyses. Availability of a tailored online database is the desire for many investigators or research communities; however, managing the Information Technology infrastructure needed to create such a database can be an undesired distraction from primary research or potentially cost prohibitive. Tripal provides simplified site development by merging the power of Drupal, a popular web Content Management System with that of Chado, a community-derived database schema for storage of genomic, genetic and other related biological data. Tripal provides an interface that extends the content management features of Drupal to the data housed in Chado. Furthermore, Tripal provides a web-based Chado installer, genomic data loaders, web-based editing of data for organisms, genomic features, biological libraries, controlled vocabularies and stock collections. Also available are Tripal extensions that support loading and visualizations of NCBI BLAST, InterPro, Kyoto Encyclopedia of Genes and Genomes and Gene Ontology analyses, as well as an extension that provides integration of Tripal with GBrowse, a popular GMOD tool. An Application Programming Interface is available to allow creation of custom extensions by site developers, and the look-and-feel of the site is completely customizable through Drupal-based PHP template files. Addition of non-biological content and user-management is afforded through Drupal. Tripal is an open source and freely available software package found at http://tripal.sourceforge.net.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.