Evidence map›Paper›PMID 21958058›Full record

ArticleJournal of the American Chemical Society2011

Oxygen reactivity in flavoenzymes: context matters.

Claudia A McDonald, Rebecca L Fagan, François Collard, Vincent M Monnier, Bruce A Palfey

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 74 citations in OpenAlex.

  1. Elucidating the Role of OACS environmental Au · 2024
    Article
  2. Article
  3. Spin Dynamics of Flavoproteins.International journal of molecular sciences · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Enzymatic control of dioxygen binding and functionalization of the flavin cofactor.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Review
  12. Beyond ferryl-mediated hydroxylation: 40 years of the rebound mechanism and C-H activation.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2017
    Review
  13. Article
  14. The Oxygen Dilemma: A Severe Challenge for the Application of Monooxygenases?Chembiochem : a European journal of chemical biology · 2016
    Review
  15. Article
  16. Article
  17. Structure of DnmZ, a nitrososynthase in the Streptomyces peucetius anthracycline biosynthetic pathway.Acta crystallographica. Section F, Structural biology communications · 2015
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Claudia A McDonaldDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109-0606, USA.
Rebecca L Fagan
François Collard
Vincent M Monnier
Bruce A Palfey
University of Michigan–Ann Arbor · USCase Western Reserve University · USUCLouvain · BE

Funding

INTERDEPARTMENTAL TRAINING IN PHARMACOLOGICAL SCIENCEST32GM007767 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ISOM, LORI L. · 1985 to 2019
$10.2M
AMINO-CARBONYL REACTIONS IN THE AGING HUMAN LENSR01EY007099 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI MONNIER, VINCENT M · 1987 to 2016
$4.3M
Mechanisms of Dihydroorotate DehydrogenasesR01GM061087 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PALFEY, BRUCE A · 2002 to 2011
$2.1M
NEI NIH HHS EY07099NEI NIH HHS R01 EY007099NIGMS NIH HHS GM07767NIGMS NIH HHS GM61087NIGMS NIH HHS GM61087-08-S1NIGMS NIH HHS R01 GM061087NIGMS NIH HHS T32 GM007767
6 · The paper itself

Abstract

Many flavoenzymes--oxidases and monooxygenases--react faster with oxygen than free flavins do. There are many ideas on how enzymes cause this. Recent work has focused on the importance of a positive charge near N5 of the reduced flavin. Fructosamine oxidase has a lysine near N5 of its flavin. We measured a rate constant of 1.6 × 10(5) M(-1) s(-1) for its reaction with oxygen. The Lys276Met mutant reacted with a rate constant of 291 M(-1) s(-1), suggesting an important role for this lysine in oxygen activation. The dihydroorotate dehydrogenases from E. coli and L. lactis also have a lysine near N5 of the flavin. They react with O(2) with rate constants of 6.2 × 10(4) and 3.0 × 10(3) M(-1) s(-1), respectively. The Lys66Met and Lys43Met mutant enzymes react with rate constants that are nearly the same as those for the wild-type enzymes, demonstrating that simply placing a positive charge near N5 of the flavin does not guarantee increased oxygen reactivity. Our results show that the lysine near N5 does not exert an effect without an appropriate context; evolution did not find only one mechanism for activating the reaction of flavins with O(2).

Indexed as

FlavinsFructosamineKineticsModels, MolecularMolecular StructureOxidation-ReductionOxidoreductasesOxygenasescyclohexanone oxygenaseFlavinsFructosamineOxidoreductasesOxygenases

Identifiers

PMID21958058
PMCPMC3203534
OpenAlexW2115598687

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.