Evidence map›Paper›PMID 21953456›Full record

ArticleThe Journal of biological chemistry2011

Mechanism of HIV reverse transcriptase inhibition by zinc: formation of a highly stable enzyme-(primer-template) complex with profoundly diminished catalytic activity.

Katherine J Fenstermacher, Jeffrey J DeStefano

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 51 citations in OpenAlex.

  1. Trial
  2. Article
  3. Pharmacophores of Influenza Virus PA Endonuclease Inhibitors.Advances in experimental medicine and biology · 2026
    Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Structural basis for CaBiophysics and physicobiology · 2021
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. The Role of Zinc in Antiviral Immunity.Advances in nutrition (Bethesda, Md.) · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Katherine J FenstermacherDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, USA.
Jeffrey J DeStefano
University of Maryland, College Park · US

Funding

MECHANISM OF RECOMBINATION BY HIV REVERSE TRANSCRIPTASER01GM051140 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI DESTEFANO, JEFFREY J · 2000 to 2011
$3.0M
MECHANISM OF RECOMBINATION BY HIV REVERSE TRANSCRIPTASER29GM051140 · NIGMS · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI DESTEFANO, JEFFREY J · 1994 to 1998
–
NIGMS NIH HHS GM051140NIGMS NIH HHS R01 GM051140NIGMS NIH HHS R29 GM051140
6 · The paper itself

Abstract

Several physiologically relevant cations including Ca(2+), Mn(2+), and Zn(2+) have been shown to inhibit HIV reverse transcriptase (RT), presumably by competitively displacing one or more Mg(2+) ions bound to RT. We analyzed the effects of Zn(2+) on reverse transcription and compared them to Ca(2+) and Mn(2+). Using nucleotide extension efficiency as a readout, Zn(2+) showed significant inhibition of reactions with 2 mM Mg(2+), even when present at only ∼5 μM. Mn(2+) and Ca(2+) were also inhibitory but at higher concentrations. Both Mn(2+) and Zn(2+) (but not Ca(2+)) supported RT incorporation in the absence of Mg(2+) with Mn(2+) being much more efficient. The maximum extension rates with Zn(2+), Mn(2+), and Mg(2+) were ∼0.1, 1, and 3.5 nucleotides per second, respectively. Zinc supported optimal RNase H activity at ∼25 μM, similar to the optimal for nucleotide addition in the presence of low dNTP concentrations. Surprisingly, processivity (average number of nucleotides incorporated in a single binding event with enzyme) during reverse transcription was comparable with Zn(2+) and Mg(2+), and single RT molecules were able to continue extension in the presence of Zn(2+) for several hours on the same template. Consistent with this result, the half-life for RT-Zn(2+)-(primer-template) complexes was 220 ± 60 min and only 1.7 ± 1 min with Mg(2+), indicating ∼130-fold more stable binding with Zn(2+). Essentially, the presence of Zn(2+) promotes the formation of a highly stable slowly progressing RT-(primer-template) complex.

Indexed as

Avian Myeloblastosis VirusBiocatalysisCalciumDeoxyribonucleotidesDNA PrimersDose-Response Relationship, DrugEnzyme StabilityHIV-1HIV Reverse TranscriptaseKineticsMagnesiumMoloney murine leukemia virusMutationReverse Transcriptase InhibitorsRibonuclease H, Human Immunodeficiency VirusTemplates, GeneticCalciumDeoxyribonucleotidesDNA PrimersHIV Reverse TranscriptaseMagnesiumReverse Transcriptase InhibitorsRibonuclease H, Human Immunodeficiency VirusZinc

Identifiers

PMID21953456
PMCPMC3220506
OpenAlexW2093410202

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.