Evidence map›Paper›PMID 21952543›Full record

ArticleJournal of bacteriology2011

Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores.

Kristen S Swithers, Jonathan L DiPippo, David C Bruce, Christopher Detter, Roxanne Tapia, Shunsheng Han, Elizabeth Saunders, Lynne A Goodwin, James Han, Tanja Woyke and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Complete genome sequence ofStandards in genomic sciences · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 2 countries.

Kristen S SwithersDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut 06269-3125, USA.
Jonathan L DiPippo
David C Bruce
Christopher Detter
Roxanne Tapia
Shunsheng Han
Elizabeth Saunders
Lynne A Goodwin
James Han
Tanja Woyke
Sam Pitluck
Len Pennacchio
Matthew Nolan
Natalia Mikhailova
Athanasios Lykidis
Miriam L Land
Thomas Brettin
Karl O Stetter
Karen E Nelson
J Peter Gogarten
Kenneth M Noll
Joint Genome Institute · USLos Alamos National Laboratory · USUniversity of Connecticut · USOak Ridge National Laboratory · USJ. Craig Venter Institute · USUniversity of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermotoga sp. strain RQ2 is probably a strain of Thermotoga maritima. Its complete genome sequence allows for an examination of the extent and consequences of gene flow within Thermotoga species and strains. Thermotoga sp. RQ2 differs from T. maritima in its genes involved in myo-inositol metabolism. Its genome also encodes an apparent fructose phosphotransferase system (PTS) sugar transporter. This operon is also found in Thermotoga naphthophila strain RKU-10 but no other Thermotogales. These are the first reported PTS transporters in the Thermotogales.

Indexed as

Genome, BacterialAzoresBacterial ProteinsBase SequenceFructoseHot TemperatureMolecular Sequence DataOperonPhosphotransferasesSeawaterThermotoga maritimaBacterial ProteinsFructosePhosphotransferases

Identifiers

PMID21952543
PMCPMC3187219
OpenAlexW2141344641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.