Evidence map›Paper›PMID 21951660›Full record

ArticleThe FEBS journal2011

Structural and biochemical characterization of the inhibitor complexes of xenotropic murine leukemia virus-related virus protease.

Mi Li, Alla Gustchina, Krisztina Matúz, Jozsef Tözsér, Sirilak Namwong, Nathan E Goldfarb, Ben M Dunn, Alexander Wlodawer

Open access · bronzeAbstract read
In one paragraph

Article in The FEBS journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Structure of RC1339/APRc from Rickettsia conorii, a retropepsin-like aspartic protease.Acta crystallographica. Section D, Biological crystallography · 2015
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Mi LiProtein Structure Section, Macromolecular Crystallography Laboratory, National Cancer Institute, Frederick, MD 21702-1201, USA.
Alla Gustchina
Krisztina Matúz
Jozsef Tözsér
Sirilak Namwong
Nathan E Goldfarb
Ben M Dunn
Alexander Wlodawer
Frederick National Laboratory for Cancer Research · USUniversity of Debrecen · HUUniversity of Florida · USNational Cancer Institute · USSuan Sunandha Rajabhat University · TH

Funding

Protein StructureZIABC010348 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WLODAWER, ALEXANDER · 2009 to 2025
$27.5M
Human Immunodeficiency Virus ProteinaseR37AI028571 · NIAID · UNIVERSITY OF FLORIDA · PI DUNN, BEN M. · 2005 to 2014
$3.8M
TRAINING IN THE CELL BIOLOGY AND IMMUNOBIOLOGY OF CANCERT32CA009126 · NCI · UNIVERSITY OF FLORIDA · PI MAY, WILLIAM STRATFORD · 1985 to 2012
$3.5M
CCR NIH HHS HHSN261200800001CIntramural NIH HHS ZIA BC010348NCI NIH HHS 5T32 CA009126-33NCI NIH HHS HHSN261200800001ENCI NIH HHS T32 CA009126NIAID NIH HHS R37 AI028571NIAID NIH HHS R37 AI28571
6 · The paper itself

Abstract

Interactions between the protease (PR) encoded by the xenotropic murine leukemia virus-related virus and a number of potential inhibitors have been investigated by biochemical and structural techniques. It was observed that several inhibitors used clinically against HIV PR exhibit nanomolar or even subnanomolar values of K(i) , depending on the exact experimental conditions. Both TL-3, a universal inhibitor of retroviral PRs, and some inhibitors originally shown to inhibit plasmepsins were also quite potent, whereas inhibition by pepstatin A was considerably weaker. Crystal structures of the complexes of xenotropic murine leukemia virus-related virus PR with TL-3, amprenavir and pepstatin A were solved at high resolution and compared with the structures of complexes of these inhibitors with other retropepsins. Whereas TL-3 and amprenavir bound in a predictable manner, spanning the substrate-binding site of the enzyme, two molecules of pepstatin A bound simultaneously in an unprecedented manner, leaving the catalytic water molecule in place.

Indexed as

AnimalsBinding SitesCarbamatesCrystallography, X-RayDimerizationFuransMiceModels, MolecularPepstatinsPeptide HydrolasesProtease InhibitorsProtein BindingProtein ConformationSulfonamidesXenotropic murine leukemia virus-related virusamprenavirCarbamatesFuranspepstatinPepstatinsPeptide HydrolasesProtease InhibitorsSulfonamides

Identifiers

PMID21951660
PMCPMC3500906
OpenAlexW2129810729

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.