Evidence map›Paper›PMID 21951169›Full record

ArticleJournal of neurochemistry2011

Identification of Bax-voltage-dependent anion channel 1 complexes in digitonin-solubilized cerebellar granule neurons.

Dennis B Huckabee, Mika B Jekabsons

Abstract readComparative Study
In one paragraph

Article in Journal of neurochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Knockout of VDAC1 in H9c2 Cells Promotes Oxidative Stress-Induced Cell Apoptosis through Decreased Mitochondrial Hexokinase II Binding and Enhanced Glycolytic Stress.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology · 2020
    Article
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Dennis B HuckabeeDepartment of Biology, University of Mississippi, University, Mississippi, USA.
Mika B Jekabsons
University of Mississippi · US

Funding

SOURCING, ACQUISITION AND DATABASE COREP20RR021929 · NCRR · UNIVERSITY OF MISSISSIPPI · PI DOERKSEN, ROBERT J · 2006 to 2010
$11.1M
Regulation of the pro-apoptotic protein Bax during neuronal apoptosisR15NS060107 · NINDS · UNIVERSITY OF MISSISSIPPI · PI JEKABSONS, MIKA · 2008 to 2008
$212k
NCRR NIH HHS 5P20RR021929NCRR NIH HHS P20 RR021929NINDS NIH HHS R15 NS060107NINDS NIH HHS R15NS060107
6 · The paper itself

Abstract

Mitochondrial outer membrane Bax oligomers are critical for cytochrome c release, but the role of resident mitochondrial proteins in this process remains unclear. Membrane-associated Bax has primarily been studied using 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS) as the solubilizing agent, as it does not induce conformational artifacts, although recent evidence indicates it may have other artifactual effects. The objective of this study was to investigate digitonin as an alternative detergent to assess Bax oligomeric state, and possible interaction with voltage-dependent anion channel (VDAC)1 in cerebellar granule neurons. VDAC1 co-immunoprecipitated with Bax in digitonin extracts from healthy and apoptotic neurons. Two-dimensional blue native-SDS-PAGE revealed five Bax and VDAC1 oligomers having similar masses from 120 to 500 kDa. The levels of two VDAC1 oligomers in Bax 1D1 immunodepleted extracts negatively correlated with levels of co-precipitated VDAC1, indicating the co-precipitated VDAC1 was derived from these oligomers. Immunodepletion with the 6A7 antibody modestly reduced the levels of Bax oligomers from apoptotic but not healthy neurons. A sixth 170 kDa oligomer containing exclusively 6A7 Bax and no VDAC1 was identified after apoptosis induction. CHAPS failed to solubilize VDAC1, and additionally yielded no distinct oligomers. We conclude that digitonin is a potentially useful detergent preserving Bax-VDAC1 interactions that may be disrupted with CHAPS.

Indexed as

AnimalsAnimals, Newbornbcl-2-Associated X ProteinCerebellar CortexCholic AcidsCytoplasmic GranulesDigitoninNeuronsPrimary Cell CultureRatsRats, WistarSolubilityVoltage-Dependent Anion Channel 13-((3-cholamidopropyl)dimethylammonium)-1-propanesulfonateBax protein, ratbcl-2-Associated X ProteinCholic AcidsDigitoninVdac1 protein, ratVoltage-Dependent Anion Channel 1

Identifiers

PMID21951169
PMCPMC3217164
OpenAlexW2168051998

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.