Evidence map›Paper›PMID 21949787›Full record

Trial reportPloS one2011

Angiomyolipoma have common mutations in TSC2 but no other common genetic events.

Wei Qin, Vineeta Bajaj, Izabela Malinowska, Xin Lu, Laura MacConaill, Chin-Lee Wu, David J Kwiatkowski

Open access · goldAbstract readClinical Trial
In one paragraph

Trial report in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 69 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Wei QinTranslational Medicine Division, Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts, United States of America.
Vineeta Bajaj
Izabela Malinowska
Xin Lu
Laura MacConaill
Chin-Lee Wu
David J Kwiatkowski
Brigham and Women's Hospital · USMassachusetts General Hospital · USDana-Farber Cancer Institute · US

Funding

Tuberous Sclerosis-Pathway and PathogenesisP01CA120964 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI David J. Kwiatkowski · 2007 to 2026
$35.9M
Tuberous Sclerosis: Mutations and Murine ModelsR37NS031535 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI KWIATKOWSKI, DAVID J. · 2007 to 2013
$2.5M
NCI NIH HHS 1P01CA120964-01A1NCI NIH HHS P01 CA120964NINDS NIH HHS 4R37NS031535-18NINDS NIH HHS R37 NS031535
6 · The paper itself

Abstract

Renal angiomyolipoma are part of the PEComa family of neoplasms, and occur both in association with Tuberous Sclerosis Complex (TSC) and independent of that disorder. Previous studies on the molecular genetic alterations that occur in angiomyolipoma are very limited. We evaluated 9 angiomyolipoma for which frozen tissue was available from a consecutive surgical series. Seven of 8 samples subjected to RT-PCR-cDNA sequencing showed mutations in TSC2; none showed mutations in TSC1 or RHEB. Six of the seven mutations were deletions. We searched for 983 activating and inactivating mutations in 115 genes, and found none in these tumors. Similarly analysis for genomic regions of loss or gain, assessed by Affymetrix SNP6.0 analysis, showed no abnormalities. Loss of heterozygosity in the TSC2 region was commonly seen, except in patients with low frequency TSC2 mutations. We conclude that sporadic renal angiomyolipoma usually have mutations in TSC2, but not TSC1 or RHEB, and have no other common genomic events, among those we searched for. However, chromosomal translocations and gene fusion events were not assessed here. TSC2 inactivation by mutation is a consistent and likely necessary genetic event in the pathogenesis of most angiomyolipoma.

Indexed as

Gene AmplificationGene DeletionLoss of HeterozygosityAdultAgedAngiomyolipomaDNA Mutational AnalysisFemaleHumansImmunoenzyme TechniquesKidney NeoplasmsMaleMiddle AgedMonomeric GTP-Binding ProteinsMutationNeuropeptidesMonomeric GTP-Binding ProteinsNeuropeptidesRas Homolog Enriched in Brain ProteinRHEB protein, humanRNA, MessengerTSC2 protein, humanTuberous Sclerosis Complex 2 ProteinTumor Suppressor Proteins

Identifiers

PMID21949787
PMCPMC3174984
OpenAlexW2031326555

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.