Evidence map›Paper›PMID 21949356›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Rumi functions as both a protein O-glucosyltransferase and a protein O-xylosyltransferase.

Hideyuki Takeuchi, Rodrigo C Fernández-Valdivia, Devin S Caswell, Aleksandra Nita-Lazar, Nadia A Rana, Thomas P Garner, Thomas K Weldeghiorghis, Megan A Macnaughtan, Hamed Jafar-Nejad, Robert S Haltiwanger

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Article
  3. Significant Roles of NotchMolecules (Basel, Switzerland) · 2022
    Review
  4. Article
  5. Article
  6. Biophysics of Notch Signaling.Annual review of biophysics · 2021
    Review
  7. Current Views on the Roles ofBiomolecules · 2021
    Review
  8. Review
  9. Review
  10. Other Types of Glycosylation.Advances in experimental medicine and biology · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Decoding the PTM-switchboard of Notch.Biochimica et biophysica acta. Molecular cell research · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Two novel proteinProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Hideyuki TakeuchiDepartment of Biochemistry and Cell Biology, Institute of Cell and Developmental Biology, Stony Brook University, Stony Brook, NY 11794, USA.
Rodrigo C Fernández-Valdivia
Devin S Caswell
Aleksandra Nita-Lazar
Nadia A Rana
Thomas P Garner
Thomas K Weldeghiorghis
Megan A Macnaughtan
Hamed Jafar-Nejad
Robert S Haltiwanger
Stony Brook University · USLouisiana State University · USBrown Foundation · US

Funding

Protein Modifications Involved in Cell SignalingZIAAI001084 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI NITA-LAZAR, ALEKSANDRA · 2009 to 2025
$11.4M
Absolute Quantification of Molecular Representation and InteractionZIAAI001085 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI NITA-LAZAR, ALEKSANDRA · 2009 to 2025
$10.7M
O-Glycosylation of Epidermal Growth Factor-like MotifsR01GM061126 · NIGMS · UNIVERSITY OF GEORGIA · PI HALTIWANGER, ROBERT S. · 2001 to 2021
$9.1M
Fine-Tuning the Notch Signaling Pathway via O-GlucosylationR01GM084135 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI JAFAR-NEJAD, HAMED · 2008 to 2017
$2.6M
NIGMS NIH HHS GM084135NIGMS NIH HHS GM61126NIGMS NIH HHS R01 GM061126NIGMS NIH HHS R01 GM084135
6 · The paper itself

Abstract

Mutations in rumi result in a temperature-sensitive loss of Notch signaling in Drosophila. Drosophila Rumi is a soluble, endoplasmic reticulum-retained protein with a CAP10 domain that functions as a protein O-glucosyltransferase. In human and mouse genomes, three potential Rumi homologues exist: one with a high degree of identity to Drosophila Rumi (52%), and two others with lower degrees of identity but including a CAP10 domain (KDELC1 and KDELC2). Here we show that both mouse and human Rumi, but not KDELC1 or KDELC2, catalyze transfer of glucose from UDP-glucose to an EGF repeat from human factor VII. Similarly, human Rumi, but not KDELC1 or KDELC2, rescues the Notch phenotypes in Drosophila rumi clones. During characterization of the Rumi enzymes, we noted that, in addition to protein O-glucosyltransferase activity, both mammalian and Drosophila Rumi also showed significant protein O-xylosyltransferase activity. Rumi transfers Xyl or glucose to serine 52 in the O-glucose consensus sequence ( ) of factor VII EGF repeat. Surprisingly, the second serine (S53) facilitates transfer of Xyl, but not glucose, to the EGF repeat by Rumi. EGF16 of mouse Notch2, which has a diserine motif in the consensus sequence ( ), is also modified with either O-Xyl or O-glucose glycans in cells. Mutation of the second serine (S590A) causes a loss of O-Xyl but not O-glucose at this site. Altogether, our data establish dual substrate specificity for the glycosyltransferase Rumi and provide evidence that amino acid sequences of the recipient EGF repeat significantly influence which donor substrate (UDP-glucose or UDP-Xyl) is used.

Indexed as

AnimalsDrosophilaDrosophila ProteinsFactor VIIGlucosyltransferasesHumansMass SpectrometryMiceMutationPentosyltransferasesSignal TransductionSubstrate SpecificityUDP Xylose-Protein XylosyltransferaseDrosophila ProteinsFactor VIIGlucosyltransferasesPentosyltransferasesRumi protein, DrosophilaUDP Xylose-Protein Xylosyltransferase

Identifiers

PMID21949356
PMCPMC3189016
OpenAlexW2171394975

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.