Evidence map›Paper›PMID 21949122›Full record

ArticleThe Journal of biological chemistry2011

Gle1 is a multifunctional DEAD-box protein regulator that modulates Ded1 in translation initiation.

Timothy A Bolger, Susan R Wente

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  4. Review
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  9. Article
  10. Dbp5/DDX19 between Translational Readthrough and Nonsense Mediated Decay.International journal of molecular sciences · 2020
    Review
  11. Review
  12. Article
  13. Article
  14. Article
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  17. Article
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  19. Nup42 and IPTraffic (Copenhagen, Denmark) · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Timothy A BolgerDepartment of Cell & Developmental Biology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Susan R Wente
Vanderbilt University · US

Funding

BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Molecular Analysis of Nuclear Pore Complex FunctionR37GM051219 · NIGMS · VANDERBILT UNIVERSITY · PI WENTE, SUSAN R. · 2010 to 2019
$5.6M
The function of mRNA export factor Gle1 in translation regulationF32GM082065 · NIGMS · VANDERBILT UNIVERSITY · PI BOLGER, TIMOTHY A · 2007 to 2008
$96k
NCI NIH HHS T32 CA009582NIGMS NIH HHS F32 GM082065NIGMS NIH HHS F32-GM082065NIGMS NIH HHS R37 GM051219NIGMS NIH HHS R37-GM51219
6 · The paper itself

Abstract

DEAD-box protein (Dbp) family members are essential for gene expression; however, their precise roles and regulation are not fully defined. During messenger (m)RNA export, Gle1 bound to inositol hexakisphosphate (IP(6)) acts via Dbp5 to facilitate remodeling of mRNA-protein complexes. In contrast, here we define a novel Gle1 role in translation initiation through regulation of a different DEAD-box protein, the initiation factor Ded1. We find that Gle1 physically and genetically interacts with Ded1. Surprisingly, whereas Gle1 stimulates Dbp5, it inhibits Ded1 ATPase activity in vitro, and IP(6) does not affect this inhibition. Functionally, a gle1-4 mutant specifically suppresses initiation defects in a ded1-120 mutant, and ded1 and gle1 mutants have complementary perturbations in AUG start site recognition. Consistent with this role in initiation, Gle1 inhibits translation in vitro in competent extracts. These results indicate that Gle1 has a direct role in initiation and negatively regulates Ded1. Together, the differential regulation of two distinct DEAD-box proteins by a common factor (Gle1) establishes a new paradigm for controlling gene expression and coupling translation with mRNA export.

Indexed as

Biological Transport, ActiveDEAD-box RNA HelicasesGene Expression Regulation, FungalMutationNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsPeptide Chain Initiation, TranslationalRNA, FungalRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDBP5 protein, S cerevisiaeDEAD-box RNA HelicasesDED1 protein, S cerevisiaeGLE1 protein, S cerevisiaeNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsRNA, FungalRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID21949122
PMCPMC3220593
OpenAlexW2052439612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.