Evidence map›Paper›PMID 21948797›Full record

ArticleNucleic acids research2012

The structural characterization of a prophage-encoded extracellular DNase from Streptococcus pyogenes.

Justyna E Korczynska, Johan P Turkenburg, Edward J Taylor

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Virulence factors ofFrontiers in microbiology · 2022
    Review
  7. Frontiers in microbiology · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Structural characterization of the virulence factor nuclease A from Streptococcus agalactiae.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Justyna E KorczynskaDepartment of Chemistry, Structural Biology Laboratory, The University of York, YO10 5YW, UK.
Johan P Turkenburg
Edward J Taylor
University of York · GB

Funding

Biotechnology and Biological Sciences Research Council DTA A0031002
6 · The paper itself

Abstract

The pathogenic bacterium Group A Streptococcus pyogenes produces several extracellular DNases that have been shown to facilitate invasive infection by evading the human host immune system. DNases degrade the chromatin in neutrophil extracellular traps, enabling the bacterium to evade neutrophil capture. Spd1 is a type I, nonspecific ββα/metal-dependent nuclease from Streptococcus pyogenes, which is encoded by the SF370.1 prophage and is likely to be expressed as a result of prophage induction. We present here the X-ray structure of this DNase in the wild-type and Asn145Ala mutant form. Through structural and sequence alignments as well as mutagenesis studies, we have identified the key residues His121, Asn145 and Glu164, which are crucial for Spd1 nucleolytic activity and shown the active site constellation. Our wild-type structure alludes to the possibility of a catalytically blocked dimeric form of the protein. We have investigated the multimeric nature of Spd1 using size-exclusion chromatography with multi-angle light scattering (SEC-MALLS) in the presence and absence of the divalent metal ion Mg(2+), which suggests that Spd1 exists in a monomeric form in solution.

Indexed as

Amino Acid SequenceBacterial ProteinsCloning, MolecularCrystallography, X-RayDeoxyribonucleasesModels, MolecularMolecular Sequence DataMolecular WeightMutagenesisProphagesProtein Structure, QuaternarySequence Homology, Amino AcidStreptococcus pyogenesBacterial ProteinsDeoxyribonucleases

Identifiers

PMID21948797
PMCPMC3258162
OpenAlexW2115632216

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.