Evidence map›Paper›PMID 21948486›Full record

ArticleHuman mutation2012

Recurrent deletions and reciprocal duplications of 10q11.21q11.23 including CHAT and SLC18A3 are likely mediated by complex low-copy repeats.

Paweł Stankiewicz, Shashikant Kulkarni, Avinash V Dharmadhikari, Srirangan Sampath, Samarth S Bhatt, Tamim H Shaikh, Zhilian Xia, Amber N Pursley, M Lance Cooper, Marwan Shinawi and 43 more

Open access · bronzeAbstract read
In one paragraph

Article in Human mutation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Pooled it
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  4. Human-specific gene expansions contribute to brain evolution.bioRxiv : the preprint server for biology · 2025
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  8. Prenatal diagnosis and genetic counseling of aThe Journal of international medical research · 2024
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  9. Review
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  11. A Novel Mutation inJournal of pediatric genetics · 2022
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  12. Article
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  14. Review
  15. Article
  16. Article
  17. Article
  18. Distinct subtypes of genomicMolecular cytogenetics · 2018
    Article
  19. Copy Number Variation Disorders.Current genetic medicine reports · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

53 authors at 16 institutions in 2 countries.

Paweł StankiewiczDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA. pawels@bcm.edu
Shashikant Kulkarni
Avinash V Dharmadhikari
Srirangan Sampath
Samarth S Bhatt
Tamim H Shaikh
Zhilian Xia
Amber N Pursley
M Lance Cooper
Marwan Shinawi
Alex R Paciorkowski
Dorothy K Grange
Michael J Noetzel
Scott Saunders
Paul Simons
Marshall Summar
Brendan Lee
Fernando Scaglia
Florence Fellmann
Danielle Martinet
Jacques S Beckmann
Alexander Asamoah
Kathryn Platky
Susan Sparks
Ann S Martin
Suneeta Madan-Khetarpal
Jacqueline Hoover
Livija Medne
Carsten G Bonnemann
John B Moeschler
Stephanie E Vallee
Sumit Parikh
Polly Irwin
Victoria P Dalzell
Wendy E Smith
Valerie C Banks
David B Flannery
Carolyn M Lovell
Gary A Bellus
Kathryn Golden-Grant
Jerome L Gorski
Jennifer L Kussmann
Tracy L McGregor
Rizwan Hamid
Jean Pfotenhauer
Blake C Ballif
Chad A Shaw
Sung-Hae L Kang
Carlos A Bacino
Ankita Patel
Jill A Rosenfeld
Sau Wai Cheung
Lisa G Shaffer
Baylor College of Medicine · USWashington University in St. Louis · USPerkinElmer (United States) · USUniversity of Colorado Denver · USVanderbilt University · USCarolinas Medical Center · USChildren's Hospital of Philadelphia · USChildren's Hospital of Pittsburgh · USCleveland Clinic · USDartmouth–Hitchcock Medical Center · USUniversity of Louisville · USUniversity of Missouri · USBaylor Genetics · USChildren's National · USSeattle Children's Hospital · USUniversity of Lausanne · CH

Funding

MEDICAL GENETICS RESEARCH FELLOWSHIP PROGRAMT32GM007526 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Brendan Lee · 1985 to 2026
$11.4M
Role of BMPR2 expression in HPAH; implications for novel therapeutic approachesR01HL102020 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HAMID, RIZWAN · 2011 to 2015
$2.3M
Functions of the TG-Interacting Transcription Factor (TGIF) in HematopoiesisK08HL089903 · NHLBI · VANDERBILT UNIVERSITY · PI HAMID, RIZWAN · 2009 to 2012
$441k
NHLBI NIH HHS K08 HL089903NHLBI NIH HHS R01 HL102020NIGMS NIH HHS T32 GM007526
6 · The paper itself

Abstract

We report 24 unrelated individuals with deletions and 17 additional cases with duplications at 10q11.21q21.1 identified by chromosomal microarray analysis. The rearrangements range in size from 0.3 to 12 Mb. Nineteen of the deletions and eight duplications are flanked by large, directly oriented segmental duplications of >98% sequence identity, suggesting that nonallelic homologous recombination (NAHR) caused these genomic rearrangements. Nine individuals with deletions and five with duplications have additional copy number changes. Detailed clinical evaluation of 20 patients with deletions revealed variable clinical features, with developmental delay (DD) and/or intellectual disability (ID) as the only features common to a majority of individuals. We suggest that some of the other features present in more than one patient with deletion, including hypotonia, sleep apnea, chronic constipation, gastroesophageal and vesicoureteral refluxes, epilepsy, ataxia, dysphagia, nystagmus, and ptosis may result from deletion of the CHAT gene, encoding choline acetyltransferase, and the SLC18A3 gene, mapping in the first intron of CHAT and encoding vesicular acetylcholine transporter. The phenotypic diversity and presence of the deletion in apparently normal carrier parents suggest that subjects carrying 10q11.21q11.23 deletions may exhibit variable phenotypic expressivity and incomplete penetrance influenced by additional genetic and nongenetic modifiers.

Indexed as

Chromosome AberrationsSequence DeletionAbnormalities, MultipleChildChild, PreschoolChromosome MappingChromosomes, Human, Pair 10Developmental DisabilitiesDNA Copy Number VariationsFemaleGenetic VariationHomologous RecombinationHumansInfantIn Situ Hybridization, FluorescenceIntellectual DisabilityCAT development factorNerve Growth FactorsSLC18A3 protein, humanVesicular Acetylcholine Transport Proteins

Identifiers

PMID21948486
PMCPMC3655525
OpenAlexW2016402515

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.