ArticleGenome biology and evolution2011
Abundant degenerate miniature inverted-repeat transposable elements in genomes of epichloid fungal endophytes of grasses.
Article in Genome biology and evolution, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 38 citations in OpenAlex.
- Discovery and Characterization ofMicroorganisms · 2024Article
- Molecular mechanisms in grass-Epichloë interactions: towards endophyte driven farming to improve plant fitness and immunity.World journal of microbiology & biotechnology · 2020Review
- Efficient nonenzymatic cyclization and domain shuffling drive pyrrolopyrazine diversity from truncated variants of a fungal NRPS.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Genetic modification of asexual Epichloë endophytes with the perA gene for peramine biosynthesis.Molecular genetics and genomics : MGG · 2019Article
- Analysis of Epichloë festucae small secreted proteins in the interaction with Lolium perenne.PloS one · 2019Article
- Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae.PLoS genetics · 2018Article
- An entropy-reducing data representation approach for bioinformatic data.Database : the journal of biological databases and curation · 2018Article
- Two new miniature inverted-repeat transposable elements in the genome of the clam Donax trunculus.Genetica · 2017Article
- Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.BMC genomics · 2017Article
- Review
- Disparate independent genetic events disrupt the secondary metabolism gene perA in certain symbiotic Epichloë species.Applied and environmental microbiology · 2015Article
- Evolutionary dynamics of hAT DNA transposon families in Saccharomycetaceae.Genome biology and evolution · 2014Article
- The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola.BMC genomics · 2014Article
- Reverse transcriptase and intron number evolution.Stem cell investigation · 2014Article
- Phylogenomics of fescue grass-derived fungal endophytes based on selected nuclear genes and the mitochondrial gene complement.BMC evolutionary biology · 2013Article
- Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci.PLoS genetics · 2013Article
- Tandem repeat-containing MITEs in the clam Donax trunculus.Genome biology and evolution · 2013Article
- Genotypic and chemotypic diversity of Neotyphodium endophytes in tall fescue from Greece.Applied and environmental microbiology · 2012Article
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Authors and funding
10 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Miniature inverted-repeat transposable elements (MITEs) are abundant repeat elements in plant and animal genomes; however, there are few analyses of these elements in fungal genomes. Analysis of the draft genome sequence of the fungal endophyte Epichloë festucae revealed 13 MITE families that make up almost 1% of the E. festucae genome, and relics of putative autonomous parent elements were identified for three families. Sequence and DNA hybridization analyses suggest that at least some of the MITEs identified in the study were active early in the evolution of Epichloë but are not found in closely related genera. Analysis of MITE integration sites showed that these elements have a moderate integration site preference for 5' genic regions of the E. festucae genome and are particularly enriched near genes for secondary metabolism. Copies of the EFT-3m/Toru element appear to have mediated recombination events that may have abolished synthesis of two fungal alkaloids in different epichloae. This work provides insight into the potential impact of MITEs on epichloae evolution and provides a foundation for analysis in other fungal genomes.
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