Evidence map›Paper›PMID 21946537›Full record

ArticleNature medicine2011

Somatic deletions of genes regulating MSH2 protein stability cause DNA mismatch repair deficiency and drug resistance in human leukemia cells.

Barthelemy Diouf, Qing Cheng, Natalia F Krynetskaia, Wenjian Yang, Meyling Cheok, Deqing Pei, Yiping Fan, Cheng Cheng, Evgeny Y Krynetskiy, Hui Geng and 8 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature medicine, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00137111 (Total XV - Total Therapy Study XV for Newly Diagnosed Patients With Acute Lymphoblastic Leukemia), which is not on this map. Cited by 80 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00137111 phase3completednot on this map

Total XV - Total Therapy Study XV for Newly Diagnosed Patients With Acute Lymphoblastic Leukemia

TypeinterventionalSponsorSt. Jude Children's Research HospitalRan2000 to 2014Enrolled501ConditionsLymphoblastic Leukemia, AcuteArmsPrednisone, Dexamethasone, Vincristine, Daunorubicin, Doxorubicin, L-asparaginase, PEG-L-asparaginase, Erwinia asparaginase, Methotrexate, Cyclophosphamide, Cytarabine, Etoposide, Mercaptopurine, Imatinib, chemotherapy, intrathecal chemotherapy
3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 1 synthesis or guideline pooled it, 129 citations in OpenAlex.

  1. Pooled it
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  17. The Downregulation of Both Giant HERCs,Journal of clinical medicine · 2022
    Article
  18. Article
  19. Article
  20. The role of DNA mismatch repair in immunotherapy of human cancer.International journal of biological sciences · 2022
    Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Barthelemy DioufHematological Malignancies Program, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Qing Cheng
Natalia F Krynetskaia
Wenjian Yang
Meyling Cheok
Deqing Pei
Yiping Fan
Cheng Cheng
Evgeny Y Krynetskiy
Hui Geng
Siying Chen
William E Thierfelder
Charles G Mullighan
James R Downing
Peggy Hsieh
Ching-Hon Pui
Mary V Relling
William E Evans
St. Jude Children's Research Hospital · USNational Institute of Diabetes and Digestive and Kidney Diseases · USNational Institutes of Health · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
PHARMACOGENOMICS OF CHILDHOOD LEUKEMIA (ALL)R37CA036401 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI EVANS, WILLIAM E · 1987 to 2014
$9.7M
PAARK4Kids-Pharmacogenomics of Anticancer Agents Research in ChildrenU01GM092666 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RELLING, MARY V · 2010 to 2014
$8.9M
Intramural NIH HHSNCI NIH HHS CA 21765NCI NIH HHS P30 CA021765NCI NIH HHS R37 CA036401NCI NIH HHS R37 CA36401NIGMS NIH HHS U01 GM092666NIGMS NIH HHS U01 GM92666
6 · The paper itself

Abstract

DNA mismatch repair enzymes (for example, MSH2) maintain genomic integrity, and their deficiency predisposes to several human cancers and to drug resistance. We found that leukemia cells from a substantial proportion of children (∼11%) with newly diagnosed acute lymphoblastic leukemia have low or undetectable MSH2 protein levels, despite abundant wild-type MSH2 mRNA. Leukemia cells with low levels of MSH2 contained partial or complete somatic deletions of one to four genes that regulate MSH2 degradation (FRAP1 (also known as MTOR), HERC1, PRKCZ and PIK3C2B); we also found these deletions in individuals with adult acute lymphoblastic leukemia (16%) and sporadic colorectal cancer (13.5%). Knockdown of these genes in human leukemia cells recapitulated the MSH2 protein deficiency by enhancing MSH2 degradation, leading to substantial reduction in DNA mismatch repair and increased resistance to thiopurines. These findings reveal a previously unrecognized mechanism whereby somatic deletions of genes regulating MSH2 degradation result in undetectable levels of MSH2 protein in leukemia cells, DNA mismatch repair deficiency and drug resistance.

Indexed as

AdultBlotting, WesternCell Line, TumorChildClass II Phosphatidylinositol 3-KinasesDNA Mismatch RepairDrug Resistance, NeoplasmGene DeletionGene Knockdown TechniquesGuanine Nucleotide Exchange FactorsHumansMutS Homolog 2 ProteinPhosphatidylinositol 3-KinasesPolymorphism, Single NucleotidePrecursor Cell Lymphoblastic Leukemia-LymphomaProportional Hazards ModelsClass II Phosphatidylinositol 3-KinasesGuanine Nucleotide Exchange FactorsHERC1 protein, humanMSH2 protein, humanMTOR protein, humanMutS Homolog 2 ProteinPhosphatidylinositol 3-KinasesPIK3C2B protein, humanProtein Kinase CProtein Kinase C zetaThioguanineTOR Serine-Threonine KinasesUbiquitin-Protein Ligases

Identifiers

PMID21946537
PMCPMC3192247
OpenAlexW2070569107

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.