Evidence map›Paper›PMID 21945073›Full record

ArticleDevelopmental biology2011

Subnuclear development of the zebrafish habenular nuclei requires ER translocon function.

Caleb A Doll, Jarred T Burkart, Kyle D Hope, Marnie E Halpern, Joshua T Gamse

Abstract read
In one paragraph

Article in Developmental biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Targeted knockout of a chemokine-like gene increases anxiety and fear responses.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Cholinergic left-right asymmetry in the habenulo-interpeduncular pathway.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Caleb A DollDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.
Jarred T Burkart
Kyle D Hope
Marnie E Halpern
Joshua T Gamse
Vanderbilt University · USCarnegie Institution for Science · US

Funding

Left-Right Asymmetry of the Developing DiencephalonR01HD042215 · NICHD · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI HALPERN, MARNIE E · 2003 to 2013
$3.3M
Genetic Analysis of the L/R Asymmetric Parapineal Neurons in the Zebrafish BrainR01HD054534 · NICHD · VANDERBILT UNIVERSITY · PI GAMSE, JOSHUA T · 2007 to 2011
$1.7M
The Vertebrate Translocon Sec61alpha is Required for Habenular AsymmetryF31NS070576 · NINDS · VANDERBILT UNIVERSITY · PI DOLL, CALEB ANDREW · 2010 to 2012
$64k
NICHD NIH HHS HD042215NICHD NIH HHS HD054534NICHD NIH HHS R01 HD042215NICHD NIH HHS R01 HD054534NINDS NIH HHS F31 NS070576NINDS NIH HHS F31NS070576
6 · The paper itself

Abstract

The dorsal habenular nuclei (Dh) of the zebrafish are characterized by significant left-right differences in gene expression, anatomy, and connectivity. Notably, the lateral subnucleus of the Dh (LsDh) is larger on the left side of the brain than on the right, while the medial subnucleus (MsDh) is larger on the right compared to the left. A screen for mutations that affect habenular laterality led to the identification of the sec61a-like 1(sec61al1) gene. In sec61al1(c163) mutants, more neurons in the LsDh and fewer in the MsDh develop on both sides of the brain. Generation of neurons in the LsDh occurs more rapidly and continues for a longer time period in mutants than in WT. Expression of Nodal pathway genes on the left side of the embryos is unaffected in mutants, as is the left sided placement of the parapineal organ, which promotes neurogenesis in the LsDh of WT embryos. Ultrastructural analysis of the epithalamus indicates that ventricular precursor cells, which form an epithelium in WT embryos, lose apical-basal polarity in sec61al1(c163) mutants. Our results show that in the absence of sec61al1, an excess of precursor cells for the LsDh exit the ventricular region and differentiate, resulting in formation of bilaterally symmetric habenular nuclei.

Indexed as

AnimalsBase SequenceBody PatterningDNA PrimersEndoplasmic ReticulumHabenulaMembrane ProteinsModels, NeurologicalMutationNeurogenesisNeuronsNodal Signaling LigandsPhenotypeSEC Translocation ChannelsZebrafishZebrafish ProteinsDNA PrimersMembrane ProteinsNodal Signaling LigandsSEC Translocation ChannelsZebrafish Proteins

Identifiers

PMID21945073
PMCPMC3215860
OpenAlexW2108868972

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.