Evidence map›Paper›PMID 21944749›Full record

ArticleChemistry & biology2011

Dihydrophenylalanine: a prephenate-derived Photorhabdus luminescens antibiotic and intermediate in dihydrostilbene biosynthesis.

Jason M Crawford, Sarah A Mahlstedt, Steven J Malcolmson, Jon Clardy, Christopher T Walsh

Abstract read
In one paragraph

Article in Chemistry & biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jason M CrawfordDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Sarah A Mahlstedt
Steven J Malcolmson
Jon Clardy
Christopher T Walsh
Harvard University · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI A. Heather Eliassen · 1985 to 2026
$330.6M
The Vancomycin Biosynthetic Assembly lineR01GM049338 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALSH, CHRISTOPHER T · 1993 to 2012
$6.2M
Molecule-to-gene approaches to new natural productsR01GM086258 · NIGMS · HARVARD MEDICAL SCHOOL · PI CLARDY, JON · 2008 to 2016
$3.6M
Ecological triggers to exploit antibiotic and virulence factor regulationR00GM097096 · NIGMS · YALE UNIVERSITY · PI CRAWFORD, JASON MICHAEL · 2012 to 2014
$721k
Ecological triggers and transcriptional profiling to guide antibiotic discoveryK99GM097096 · NIGMS · HARVARD MEDICAL SCHOOL · PI CRAWFORD, JASON MICHAEL · 2011 to 2011
$90k
NCI NIH HHS 5 P30 CA06516NCI NIH HHS P30 CA006516NIGMS NIH HHS 1K99 GM097096-01NIGMS NIH HHS K99 GM097096NIGMS NIH HHS R00 GM097096NIGMS NIH HHS R01 GM049338NIGMS NIH HHS R01 GM086258NIGMS NIH HHS R01 GM49338-18
6 · The paper itself

Abstract

2,5-Dihydrophenylalanine (H(2)Phe) is a multipotent nonproteinogenic amino acid produced by various Actinobacteria and Gammaproteobacteria. Although the metabolite was discovered over 40 years ago, details of its biosynthesis have remained largely unknown. We show here that L-H(2)Phe is a secreted metabolite in Photorhabdus luminescens cultures and a precursor of a recently described 2,5-dihydrostilbene. Bioinformatic analysis suggested a candidate gene cluster for the processing of prephenate to H(2)Phe, and gene knockouts validated that three adjacent genes plu3042-3044 were required for H(2)Phe production. Biochemical experiments validated Plu3043 as a nonaromatizing prephenate decarboxylase generating an endocyclic dihydro-hydroxyphenylpyruvate. Plu3042 acted next to transaminate the Plu3043 product, precluding spontaneous exocyclic double-bond isomerization and yielding 2,5-dihydrotyrosine. The enzymatic products most plausibly on path to H(2)Phe illustrate the versatile metabolic rerouting of prephenate from aromatic amino acid synthesis to antibiotic synthesis.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsCyclohexanecarboxylic AcidsCyclohexenesGene Knockout TechniquesMultigene FamilyPhenylalaninePhotorhabdusRecombinant Proteins2,5-dihydrophenylalanineAnti-Bacterial AgentsBacterial ProteinsCyclohexanecarboxylic AcidsCyclohexenesPhenylalanineprephenic acidRecombinant Proteins

Identifiers

PMID21944749
PMCPMC3183431
OpenAlexW2156245192

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.