Evidence map›Paper›PMID 21943601›Full record

ArticleNeuron2011

Functional genomic analyses identify pathways dysregulated by progranulin deficiency, implicating Wnt signaling.

Ezra Y Rosen, Eric M Wexler, Revital Versano, Giovanni Coppola, Fuying Gao, Kellen D Winden, Michael C Oldham, Lauren Herl Martens, Ping Zhou, Robert V Farese and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Neuron, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 130 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Conserved gene signatures shared amongFrontiers in molecular biosciences · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Ezra Y RosenInterdepartmental Program for Neuroscience, University of California Los Angeles, Los Angeles, CA 90095, USA.
Eric M Wexler
Revital Versano
Giovanni Coppola
Fuying Gao
Kellen D Winden
Michael C Oldham
Lauren Herl Martens
Ping Zhou
Robert V Farese
Daniel H Geschwind
University of California, Los Angeles · USGladstone Institutes · USUniversity of California, San Francisco · US

Funding

Training Grant in Neurobehavioral GeneticsT32NS048004 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BEARDEN, CARRIE E, OPHOFF, ROEL A · 2004 to 2025
$5.8M
Novel Genetic Risk Factors for Alzheimer's Disease (AD) & Frontotemporal DementiaR01AG026938 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2005 to 2009
$2.5M
Training Grant in Neurobehavioral GeneticsT32MH073526 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BEARDEN, CARRIE E, GESCHWIND, DANIEL H · 2006 to 2020
$2.4M
Role of WNT Signaling in Adult Hippocampal Genitor Cell DevelopmentK08MH074362 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WEXLER, ERIC · 2006 to 2010
$839k
Role of Progranulin in Frontotemporal DementiaF31AG034793 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERL, LAUREN D. · 2009 to 2012
$100k
NIA NIH HHS 5R01AG026938NIA NIH HHS AG034793NIA NIH HHS F31 AG034793NIA NIH HHS R01 AG026938NIMH NIH HHS K08 MH074362NIMH NIH HHS K08MH74362NIMH NIH HHS T32 MH073526NINDS NIH HHS 5T32NS048004-05NINDS NIH HHS T32 NS048004
6 · The paper itself

Abstract

Progranulin (GRN) mutations cause frontotemporal dementia (FTD), but GRN's function in the CNS remains largely unknown. To identify the pathways downstream of GRN, we used weighted gene coexpression network analysis (WGCNA) to develop a systems-level view of transcriptional alterations in a human neural progenitor model of GRN-deficiency. This highlighted key pathways such as apoptosis and ubiquitination in GRN deficient human neurons, while revealing an unexpected major role for the Wnt signaling pathway, which was confirmed by analysis of gene expression data from postmortem FTD brain. Furthermore, we observed that the Wnt receptor Fzd2 was one of only a few genes upregulated at 6 weeks in a GRN knockout mouse, and that FZD2 reduction caused increased apoptosis, while its upregulation promoted neuronal survival in vitro. Together, these in vitro and in vivo data point to an adaptive role for altered Wnt signaling in GRN deficiency-mediated FTD, representing a potential therapeutic target.

Indexed as

GenomeAnimalsCell DeathCell DifferentiationCells, CulturedFrizzled ReceptorsGene Expression RegulationGene Regulatory NetworksGenomicsHumansIntercellular Signaling Peptides and ProteinsMiceMicroarray AnalysisNeural Stem CellsNeuronsProgranulinsFrizzled ReceptorsFZD2 protein, humanGRN protein, humanIntercellular Signaling Peptides and ProteinsProgranulinsReceptors, G-Protein-CoupledWnt Proteins

Identifiers

PMID21943601
PMCPMC3633414
OpenAlexW2037457942

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.