Evidence map›Paper›PMID 21941004›Full record

ArticleJournal of medical genetics2011

Germline BAP1 mutation predisposes to uveal melanoma, lung adenocarcinoma, meningioma, and other cancers.

Mohamed H Abdel-Rahman, Robert Pilarski, Colleen M Cebulla, James B Massengill, Benjamin N Christopher, Getachew Boru, Peter Hovland, Frederick H Davidorf

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Journal of medical genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01925599 (Identification of Germline BAP1 Mutation In Subjects With Choroidal Nevi or Uveal Melanoma), which is not on this map. Cited by 214 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
214citing papers in PubMed, 3 pooled it
30.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01925599 unknown statusnot on this mapstarted 2013, after this paper: background citation

Identification of Germline BAP1 Mutation In Subjects With Choroidal Nevi or Uveal Melanoma

TypeobservationalSponsorAmy C Schefler, MDRan2013 to 2022Enrolled133ConditionsChoroidal Nevi, Uveal Melanoma
3 · Its place in the literature

Who cites it

214 citing papers in PubMed, 3 syntheses or guidelines pooled it, 477 citations in OpenAlex.

  1. Pooled it
  2. Guideline
  3. Pooled it
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  6. International journal of molecular sciences · 2026
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  18. First Report of BAP1-Associated Polyposis.American journal of medical genetics. Part A · 2025
    Article
  19. Article
  20. BAPoma, a rare nevus, as the key to a diagnosis of BAP1-associated tumor predisposition syndrome.Journal der Deutschen Dermatologischen Gesellschaft = Journal of the German Society of Dermatology : JDDG · 2025
    Article

154 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mohamed H Abdel-RahmanDepartment of Ophthalmology, The Ohio State University, Columbus, Ohio, USA. mohamed.abdel-rahman@osumc.edu
Robert Pilarski
Colleen M Cebulla
James B Massengill
Benjamin N Christopher
Getachew Boru
Peter Hovland
Frederick H Davidorf
The Ohio State University · USColorado Retina Center · US

Funding

University of Iowa Clinical and Translational Science Program (TL1)UL1RR025755 · NCRR · OHIO STATE UNIVERSITY · PI JACKSON, REBECCA D · 2008 to 2011
$26.3M
NCRR NIH HHS UL1 RR025755
6 · The paper itself

Abstract

objectiveTo investigate the potential contribution of germline sequence alterations in the BAP1 gene in uveal melanoma (UM) patients with possible predisposition to hereditary cancer.

designA total of 53 unrelated UM patients with high risk for hereditary cancer and five additional family members of one proband were studied. Mutational screening was carried out by direct sequencing.

resultsOf the 53 UM patients studied, a single patient was identified with a germline BAP1 truncating mutation, c. 799 C→T (p.Q267X), which segregated in several family members and was associated with UM and other cancers. Biallelic inactivation of BAP1 and decreased BAP1 expression were identified in the UM, lung adenocarcinoma and meningioma tumours from three family members with this germline BAP1 mutation. Germline BAP1 variants of uncertain significance, likely non-pathogenic, were also identified in two additional UM patients.

conclusionThis study reports a novel hereditary cancer syndrome caused by a germline BAP1 mutation that predisposes patients to UM, lung carcinoma, meningioma, and possibly other cancers. The results indicate that BAP1 is the candidate gene in only a small subset of hereditary UM, suggesting the contribution of other candidate genes.

Indexed as

Germ-Line MutationAdenocarcinomaAdenocarcinoma of LungAdultChromosomes, Human, Pair 3DNA Mutational AnalysisFemaleGene Expression Regulation, NeoplasticGene SilencingGenetic Diseases, InbornGenetic Predisposition to DiseaseGenetic TestingHumansLoss of HeterozygosityLung NeoplasmsMaleBAP1 protein, humanTumor Suppressor ProteinsUbiquitin Thiolesterase

Identifiers

PMID21941004
PMCPMC3825099
OpenAlexW2147450167

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.