Evidence map›Paper›PMID 21940735›Full record

ArticleJournal of medical genetics2011

New findings for phenotype-genotype correlations in a large European series of holoprosencephaly cases.

Sandra Mercier, Christèle Dubourg, Nicolas Garcelon, Boris Campillo-Gimenez, Isabelle Gicquel, Marion Belleguic, Leslie Ratié, Laurent Pasquier, Philippe Loget, Claude Bendavid and 6 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medical genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 107 citations in OpenAlex.

  1. Syndromes associated with holoprosencephaly.American journal of medical genetics. Part C, Seminars in medical genetics · 2018
    Pooled it
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  6. Review
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  8. NewMolecular syndromology · 2021
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  16. Hedgehog Signaling and Embryonic Craniofacial Disorders.Journal of developmental biology · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Extracephalic manifestations of nonchromosomal, nonsyndromic holoprosencephaly.American journal of medical genetics. Part C, Seminars in medical genetics · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Sandra MercierService de Génétique Clinique, CLAD Ouest, CHU Rennes, Rennes, France.
Christèle Dubourg
Nicolas Garcelon
Boris Campillo-Gimenez
Isabelle Gicquel
Marion Belleguic
Leslie Ratié
Laurent Pasquier
Philippe Loget
Claude Bendavid
Sylvie Jaillard
Lucie Rochard
Chloé Quélin
Valérie Dupé
Véronique David
Sylvie Odent
Centre Hospitalier Universitaire de Rennes · FRInstitut de génétique et de développement de Rennes · FRUniversité de Rennes · FRHôpital Nord · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHoloprosencephaly (HPE) is the most common forebrain defect in humans. It results from incomplete midline cleavage of the prosencephalon.

methodsA large European series of 645 HPE probands (and 699 relatives), consisting of 51% fetuses and 49% liveborn children, is reported.

resultsMutations in the four main genes involved in HPE (SHH, ZIC2, SIX3, TGIF) were identified in 25% of cases. The SHH, SIX3, and TGIF mutations were inherited in more than 70% of these cases, whereas 70% of the mutations in ZIC2 occurred de novo. Moreover, rearrangements were detected in 22% of the 260 patients screened by array comparative genomic hybridisation. 15 probands had two mutations providing additional support for the 'multiple-hit process' in HPE. There was a positive correlation between the severity of the brain malformation and facial features for SHH, SIX3, and TGIF, but no such correlation was found for ZIC2 mutations. The most severe HPE types were associated with SIX3 and ZIC2 mutations, whereas microforms were associated with SHH mutations. The study focused on the associated brain malformations, including neuronal migration defects, which predominated in individuals with ZIC2 mutations, and neural tube defects, which were frequently associated with ZIC2 (rachischisis) and TGIF mutations. Extracraniofacial features were observed in 27% of the individuals in this series (up to 40% of those with ZIC2 mutations) and a significant correlation was found between renal/urinary defects and mutations of SHH and ZIC2.

conclusionsAn algorithm is proposed based on these new phenotype-genotype correlations, to facilitate molecular analysis and genetic counselling for HPE.

Indexed as

Genetic Association StudiesCohort StudiesComparative Genomic HybridizationDNA Mutational AnalysisEye ProteinsFemaleFetusGenetic CounselingGenetic TestingGenotypeHedgehog ProteinsHoloprosencephalyHomeobox Protein SIX3Homeodomain ProteinsHumansInfant, NewbornEye ProteinsHedgehog ProteinsHomeobox Protein SIX3Homeodomain ProteinsNerve Tissue ProteinsNuclear ProteinsRepressor ProteinsSHH protein, humanTGIF1 protein, humanTranscription FactorsZIC2 protein, human

Identifiers

PMID21940735
PMCPMC3386902
OpenAlexW1993566393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.