Evidence map›Paper›PMID 21940502›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Diverse factors are involved in maintaining X chromosome inactivation.

Kui Ming Chan, Hui Zhang, Liviu Malureanu, Jan van Deursen, Zhiguo Zhang

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. bioRxiv : the preprint server for biology · 2024
    Article
  3. Review
  4. Long noncoding RNAGenes & diseases · 2022
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Enjoy the silence: X-chromosome inactivation diversity in somatic cells.Current opinion in genetics & development · 2019
    Review
  13. Article
  14. A mixed modality approach towards Xi reactivation for Rett syndrome and other X-linked disorders.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Article
  16. Progress in understanding the molecular mechanism ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kui Ming ChanDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN 55905, USA.
Hui Zhang
Liviu Malureanu
Jan van Deursen
Zhiguo Zhang
WinnMed · USMayo Clinic in Florida · US

Funding

Identify and characterize genes involved in X-chromosome inactivationR01GM099722 · NIGMS · MAYO CLINIC ROCHESTER · PI ZHANG, ZHIGUO · 2012 to 2015
$1.2M
NIGMS NIH HHS R01 GM099722
6 · The paper itself

Abstract

X chromosome inactivation (XCI) is the most dramatic example of epigenetic silencing in eukaryotes. Once established, the inactivated X chromosome (Xi) remains silenced throughout subsequent cell divisions. Though the initiation of XCI has been studied extensively, the protein factors involved in Xi silencing and maintenance are largely unknown. Here we report the discovery of a diverse set of 32 proteins involved in maintenance of Xi silencing through a genome-wide RNAi screen. In addition, we describe the mechanistic roles of two proteins--origin recognition complex 2 (Orc2) and heterochromatin protein 1 (HP1α)--in Xi silencing. Immunofluorescence studies indicate that Orc2 and HP1α localize on Xi in mouse cells. Depletion of Orc2 by shRNA leads to the loss of both Orc2 and HP1α localization on Xi. Furthermore, the silencing of genes on Xi is disrupted in both Orc2- and HP1α-depleted cells. Finally, we show, using ChIP assay, that the localization of HP1α and Orc2 to the promoter regions of Xi-silenced genes is interdependent. These findings reveal a diverse set of proteins involved in Xi silencing, show how Orc2 and HP1α impact Xi silencing, and provide a basis for future studies on the maintenance of Xi silencing.

Indexed as

AnimalsChromatin ImmunoprecipitationChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDNA PrimersFluorescent Antibody TechniqueGreen Fluorescent ProteinsIn Situ Hybridization, FluorescenceMiceOligonucleotide Array Sequence AnalysisOrigin Recognition ComplexReverse Transcriptase Polymerase Chain ReactionRNA InterferenceRNA, Small InterferingX Chromosome InactivationChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDNA PrimersGreen Fluorescent ProteinsOrigin Recognition ComplexRNA, Small Interfering

Identifiers

PMID21940502
PMCPMC3189073
OpenAlexW1990759634

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.