Evidence map›Paper›PMID 21937661›Full record

ArticleJournal of virology2011

HIV-1 infection abrogates CD8+ T cell mitogen-activated protein kinase signaling responses.

Timothy Q Crawford, Lishomwa C Ndhlovu, Alice Tan, Alex Carvidi, Frederick M Hecht, Elizabeth Sinclair, Jason D Barbour

Abstract readComparative Study
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  3. Review
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  5. Article
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  8. Concomitant evaluation of PMA+ionomycin-induced kinase phosphorylation and cytokine production in T cell subsets by flow cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2014
    Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Timothy Q CrawfordHawaii Center for HIV/AIDS, John A. Burns School of Medicine, University of Hawaii Manoa, Honolulu, HI 96813, USA.
Lishomwa C Ndhlovu
Alice Tan
Alex Carvidi
Frederick M Hecht
Elizabeth Sinclair
Jason D Barbour
University of California, San Francisco · USUniversity of Hawaiʻi at Mānoa · USSan Francisco General Hospital · US

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Transmission and Persistence of CTL and Drug Resistance MutationsP01AI071713 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HECHT, FREDERICK M · 2007 to 2011
$14.3M
Variation in Immune Activation in HIV-1 Infected PersonsK01AI066917 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BARBOUR, JASON DAVID · 2005 to 2009
$608k
Bioinformatic Mapping of HIV-1 Nef Manipulation of T-Cell Activation and FunctionR21AI076014 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BARBOUR, JASON DAVID · 2007 to 2008
$421k
Modulating Tim-3 to control HIV infectionR56AI083112 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI NDHLOVU, LISHOMWA C · 2010 to 2010
$377k
NCRR NIH HHS UL1 RR024131NIAID NIH HHS K01 AI 066917NIAID NIH HHS K01 AI066917NIAID NIH HHS P01 AI071713NIAID NIH HHS P30 AI027763NIAID NIH HHS P30AI027763NIAID NIH HHS R21 AI 076014NIAID NIH HHS R21 AI076014NIAID NIH HHS R56 AI083112NIAID NIH HHS R56AI083112
6 · The paper itself

Abstract

Mitogen-activated protein kinase (MAPK) signaling pathways are dynamic and sensitive regulators of T cell function and differentiation. Altered MAPK signaling has been associated with the inflammatory and autoimmune diseases lupus and arthritis and with some pathogenic viral infections. HIV-1 infection is characterized by chronic immune inflammation, aberrantly heightened CD8(+) T cell activation levels, and altered T cell function. The relationship between MAPK pathway function, HIV-1-induced activation (CD38 and HLA-DR), and exhaustion (Tim-3) markers in circulating CD8(+) T cells remains unknown. Phosphorylation of the MAPK effector proteins ERK and p38 was examined by "phosflow" flow cytometry in 79 recently HIV-1-infected, antiretroviral-treatment-naïve adults and 21 risk-matched HIV-1-negative controls. We identified a subset of CD8(+) T cells refractory to phorbol 12-myristate 13-acetate plus ionomycin-induced ERK1/2 phosphorylation (referred to as p-ERK1/2-refractory cells) that was greatly expanded in HIV-1-infected adults. The CD8(+) p-ERK1/2-refractory cells were highly activated (CD38(+) HLA-DR(+)) but not exhausted (Tim-3 negative), tended to have low CD8 expression, and were enriched in intermediate and late transitional memory states of differentiation (CD45RA(-) CD28(-) CD27(+/-)). Targeting MAPK pathways to restore ERK1/2 signaling may normalize immune inflammation levels and restore CD8(+) T cell function during HIV-1 infection.

Indexed as

Signal TransductionAdultCase-Control StudiesCD8-Positive T-LymphocytesFemaleFlow CytometryHIV-1HIV InfectionsHumansLymphocyte ActivationMaleMitogen-Activated Protein Kinase 1Mitogen-Activated Protein Kinase 3Mitogen-Activated Protein KinasesPhosphorylationViral LoadMAPK1 protein, humanMitogen-Activated Protein Kinase 1Mitogen-Activated Protein Kinase 3Mitogen-Activated Protein Kinases

Identifiers

PMID21937661
PMCPMC3209373
OpenAlexW2157630483

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.