Evidence map›Paper›PMID 21936522›Full record

ArticleJournal of proteome research2011

Data-independent proteomic screen identifies novel tamoxifen agonist that mediates drug resistance.

Shawna Mae Hengel, Euan Murray, Simon Langdon, Larry Hayward, Jean O'Donoghue, Alexandre Panchaud, Ted Hupp, David R Goodlett

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Review
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  4. From development to cancer - an ever-increasing role of AGR2.American journal of cancer research · 2021
    Review
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  18. Clustering and filtering tandem mass spectra acquired in data-independent mode.Journal of the American Society for Mass Spectrometry · 2013
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Shawna Mae HengelDepartment of Medicinal Chemistry, University of Washington , Box 357610, Seattle, Washington 98195-7610, United States.
Euan Murray
Simon Langdon
Larry Hayward
Jean O'Donoghue
Alexandre Panchaud
Ted Hupp
David R Goodlett
University of Edinburgh · GBUniversity of Washington · US

Funding

Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
Fourier transform-ion cyclotron-resonance mass specS10RR017262 · NCRR · INSTITUTE FOR SYSTEMS BIOLOGY · PI GOODLETT, DAVID ROBINSON · 2003 to 2003
$782k
MULTI-TIERED PROTEOMIC COMPUTE CLUSTER: PARKINSON'S DISEASES10RR023044 · NCRR · UNIVERSITY OF WASHINGTON · PI GOODLETT, DAVID ROBINSON · 2006 to 2006
$500k
Biotechnology and Biological Sciences Research Council BB/C511599/1Cancer Research UK C483/A6354NCRR NIH HHS 1S10RR017262-01NCRR NIH HHS S10 RR017262NCRR NIH HHS S10 RR023044NIGMS NIH HHS T32 GM007750NIGMS NIH HHS T32GM07750
6 · The paper itself

Abstract

A label-free quantitative variation of the recently developed data-independent shotgun proteomic method precursor acquisition independent from ion count (PAcIFIC) was used to identify novel proteins implicated in cancer progression and resistance. Specifically, this screen identified the pro-metastatic protein anterior gradient 2 (AGR2) as significantly up-regulated in tamoxifen-treated cells. Highlighting the need for direct proteome profiling methods like PAcIFIC, neither data-dependent gas-phase fractionation nor a transcriptomic screen detected AGR2 protein/transcript at significantly up-regulated levels. Further cell-based experiments using human cancer cell lines and in vivo xenografts confirmed the PAcIFIC hypothesis that AGR2 is up-regulated in MCF-7 cells post tamoxifen treatment and that it is implicated in drug resistance mediation.

Indexed as

AnimalsAntineoplastic Agents, HormonalCell Line, TumorDrug Resistance, NeoplasmFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMiceMice, NudeModels, ChemicalMucoproteinsNeoplasm TransplantationOncogene ProteinsProteinsProteomicsAGR2 protein, humanAntineoplastic Agents, HormonalMucoproteinsOncogene ProteinsProteinsTamoxifen

Identifiers

PMID21936522
PMCPMC3242698
OpenAlexW1970071264

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.