Evidence map›Paper›PMID 21934714›Full record

ArticleEuropean journal of human genetics : EJHG2012

Involvement of surfactant protein D in emphysema revealed by genetic association study.

Takeo Ishii, Koichi Hagiwara, Koichiro Kamio, Shinobu Ikeda, Tomio Arai, Makiko Naka Mieno, Toshio Kumasaka, Masaaki Muramatsu, Motoji Sawabe, Akihiko Gemma and 1 more

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In one paragraph

Article in European journal of human genetics : EJHG, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
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  18. Surfactant phospholipid metabolism.Biochimica et biophysica acta · 2013
    Review
  19. Updates on the COPD gene list.International journal of chronic obstructive pulmonary disease · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Takeo IshiiDepartment of Internal Medicine, Division of Pulmonary Medicine, Infectious Diseases and Oncology, Nippon Medical School, Tokyo, Japan.
Koichi Hagiwara
Koichiro Kamio
Shinobu Ikeda
Tomio Arai
Makiko Naka Mieno
Toshio Kumasaka
Masaaki Muramatsu
Motoji Sawabe
Akihiko Gemma
Kozui Kida
Nippon Medical School · JPTokyo Medical and Dental University · JPTokyo Metropolitan Geriatric Hospital · JPJapanese Red Cross Medical Center · JPJichi Medical University · JPSaitama Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Surfactant protein D (SFTPD) induces emphysema in knockout mice, but the association of SFTPD with chronic obstructive pulmonary disease (COPD) and emphysema in humans is unclear. Therefore, we aimed to determine the association between genetic variations in SFTPD and susceptibility to COPD and emphysema.Two populations were studied: population A comprised 270 smokers, including 188 COPD and 82 at-risk subjects, and population B comprised 1131 autopsy cases including 160 cases with emphysema. Six single-nucleotide polymorphisms (SNPs) that tagged the linkage disequilibrium blocks on the entire SFTPD gene were genotyped; the associations of the genotypes with COPD, pulmonary function, percentage of the low-attenuation area (LAA%), and percentage of the airway wall area (WA%) were determined in population A. In population B, the associations of the genotypes with emphysema were assessed.A C allele at SNP rs721917 that results in the replacement of Met with Thr at position 11 in SFTPD was positively correlated with the LAA% in the upper lung (P = 1.1 × 10(-5)) and overall LAA% (P = 1.0 × 10(-4)), and negatively correlated with the serum concentration of SFTPD (P = 7 × 10(-11)) in the population A. The C/C (rs721917/rs10887199) haplotype was associated with emphysema in both the populations.Subjects with a C allele at rs721917 have a lower serum SFTPD concentration and are more susceptible to emphysema. This suggests a protective effect of SFTPD against COPD and emphysema.

Indexed as

Genetic Association StudiesAgedAged, 80 and overAllelesEmphysemaFemaleHumansLinkage DisequilibriumMaleMiddle AgedPhenotypePolymorphism, Single NucleotidePulmonary Disease, Chronic ObstructivePulmonary Surfactant-Associated Protein DRisk FactorsPulmonary Surfactant-Associated Protein D

Identifiers

PMID21934714
PMCPMC3260918
OpenAlexW2032745903

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.