Evidence map›Paper›PMID 21933837›Full record

ArticleHuman molecular genetics2011

Genes and pathways affected by CAG-repeat RNA-based toxicity in Drosophila.

Shin-Yi Shieh, Nancy M Bonini

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. DnaJC7 in Amyotrophic Lateral Sclerosis.International journal of molecular sciences · 2022
    Review
  5. Cells · 2022
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. International journal of molecular sciences · 2018
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. RNA toxicity and foci formation in microsatellite expansion diseases.Current opinion in genetics & development · 2017
    Review
  18. Frontiers in cellular neuroscience · 2017
    Review
  19. Frontiers in neuroscience · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Shin-Yi ShiehDepartment of Biology, University of Pennsylvania, PA 19104-6018, USA.
Nancy M Bonini
University of Pennsylvania · US

Funding

POSTTRANSLATIONAL MODIFICATIONS OF ALPHA SYNUCLEINP01AG009215 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIRGINIA M-Y · 1990 to 2009
$14.1M
Molecular Genetic Analysis of NeurodegenerationR01NS043578 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI BONINI, NANCY M · 2003 to 2007
$1.3M
Howard Hughes Medical InstituteNIA NIH HHS 5P01AG009215NIA NIH HHS P01 AG009215NINDS NIH HHS 5R01NS043578NINDS NIH HHS R01 NS043578
6 · The paper itself

Abstract

Spinocerebellar ataxia type 3 is one of the polyglutamine (polyQ) diseases, which are caused by a CAG-repeat expansion within the coding region of the associated genes. The CAG repeat specifies glutamine, and the expanded polyQ domain mutation confers dominant toxicity on the protein. Traditionally, studies have focused on protein toxicity in polyQ disease mechanisms. Recent findings, however, demonstrate that the CAG-repeat RNA, which encodes the toxic polyQ protein, also contributes to the disease in Drosophila. To provide insights into the nature of the RNA toxicity, we extracted brain-enriched RNA from flies expressing a toxic CAG-repeat mRNA (CAG100) and a non-toxic interrupted CAA/G mRNA repeat (CAA/G105) for microarray analysis. This approach identified 160 genes that are differentially expressed specifically in CAG100 flies. Functional annotation clustering analysis revealed several broad ontologies enriched in the CAG100 gene list, including iron ion binding and nucleotide binding. Intriguingly, transcripts for the Hsp70 genes, a powerful suppressor of polyQ and other human neurodegenerative diseases, were also upregulated. We therefore tested and showed that upregulation of heat shock protein 70 mitigates CAG-repeat RNA toxicity. We then assessed whether other modifiers of the pathogenic, expanded Ataxin-3 polyQ protein could also modify the CAG-repeat RNA toxicity. This approach identified the co-chaperone Tpr2, the transcriptional regulator Dpld, and the RNA-binding protein Orb2 as modifiers of both polyQ protein toxicity and CAG-repeat RNA-based toxicity. These findings suggest an overlap in the mechanisms of RNA and protein-based toxicity, providing insights into the pathogenicity of the RNA in polyQ disease.

Indexed as

AnimalsBrainDrosophila melanogasterDrosophila ProteinsGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksGenes, InsectGenetic TestingHSP70 Heat-Shock ProteinsHumansNerve DegenerationOligonucleotide Array Sequence AnalysisPeptidesRNARNA, UntranslatedDrosophila ProteinsHSP70 Heat-Shock ProteinsPeptidespolyglutamineRNARNA, Untranslated

Identifiers

PMID21933837
PMCPMC3221540
OpenAlexW2144927513

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.