Evidence map›Paper›PMID 21932445›Full record

ArticleProteomics2011

Dose-dependent proteomic analysis of glioblastoma cancer stem cells upon treatment with γ-secretase inhibitor.

Lan Dai, Jintang He, Yashu Liu, Jaeman Byun, Anuradha Vivekanandan, Subramaniam Pennathur, Xing Fan, David M Lubman

Abstract read
In one paragraph

Article in Proteomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Recent advances in quantitative neuroproteomics.Methods (San Diego, Calif.) · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lan DaiProgram of Bioinformatics, University of Michigan Medical Center, Ann Arbor, MI 48109-0650, USA.
Jintang He
Yashu Liu
Jaeman Byun
Anuradha Vivekanandan
Subramaniam Pennathur
Xing Fan
David M Lubman

Funding

Pilot and Feasibility (P and F) ProgramP30DK089503 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Joyce Lee · 2010 to 2026
$20.3M
Microsequencing in an Ion Trap/reTOF DeviceR01GM049500 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 1994 to 2016
$3.0M
Cancer Stem Cell Niche in Brain TumorsR01CA148621 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FAN, XING · 2011 to 2015
$1.6M
Investigating Cancer Stem Cells - Niche Interactions in Brain TumorR01CA163737 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FAN, XING · 2012 to 2016
$1.2M
Proteomic Pathways for Pancreatic Cancer Stem CellsR21CA134623 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 2008 to 2009
$367k
NCI NIH HHS R01 CA148621NCI NIH HHS R01 CA163737NCI NIH HHS R21 CA134623NIDDK NIH HHS DK089503NIDDK NIH HHS P30 DK089503NIGMS NIH HHS R01 GM049500PHS HHS R01 49500
6 · The paper itself

Abstract

Notch signaling has been demonstrated to have a central role in glioblastoma (GBM) cancer stem cells (CSCs) and we have demonstrated recently that Notch pathway blockade by γ-secretase inhibitor (GSI) depletes GBM CSCs and prevents tumor propagation both in vitro and in vivo. In order to understand the proteome alterations involved in this transformation, a dose-dependent quantitative mass spectrometry (MS)-based proteomic study has been performed based on the global proteome profiling and a target verification phase where both Immunoassay and a multiple reaction monitoring (MRM) assay are employed. The selection of putative protein candidates for confirmation poses a challenge due to the large number of identifications from the discovery phase. A multilevel filtering strategy together with literature mining is adopted to transmit the most confident candidates along the pipeline. Our results indicate that treating GBM CSCs with GSI induces a phenotype transformation towards non-tumorigenic cells with decreased proliferation and increased differentiation, as well as elevated apoptosis. Suppressed glucose metabolism and attenuated NFR2-mediated oxidative stress response are also suggested from our data, possibly due to their crosstalk with Notch Signaling. Overall, this quantitative proteomic-based dose-dependent work complements our current understanding of the altered signaling events occurring upon the treatment of GSI in GBM CSCs.

Indexed as

Amyloid Precursor Protein SecretasesApoptosisBlotting, WesternBrain NeoplasmsCell DifferentiationCell ProliferationEnzyme InhibitorsGlioblastomaHumansNeoplastic Stem CellsProteomeReceptors, NotchSignal TransductionTumor Cells, CulturedAmyloid Precursor Protein SecretasesEnzyme InhibitorsProteomeReceptors, Notch

Identifiers

PMID21932445
PMCPMC3517080

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.