Evidence map›Paper›PMID 21931163›Full record

ArticleThe Journal of biological chemistry2011

α-Galactosidase/sucrose kinase (AgaSK), a novel bifunctional enzyme from the human microbiome coupling galactosidase and kinase activities.

Laëtitia Bruel, Gerlind Sulzenbacher, Marine Cervera Tison, Ange Pujol, Cendrine Nicoletti, Josette Perrier, Anne Galinier, David Ropartz, Michel Fons, Frédérique Pompeo and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Molecular advances in microbial α-galactosidases: challenges and prospects.World journal of microbiology & biotechnology · 2022
    Review
  5. Heterologous Expression of a Thermostable α-Galactosidase fromJournal of microbiology and biotechnology · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Sucrose 6Microbial genomics · 2019
    Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Laëtitia BruelFaculté des Sciences et Techniques Saint-Jérôme, Université Paul Cézanne, ISM2/BiosCiences UMR CNRS 6263, service 342, 13397 Marseille Cedex 20, France.
Gerlind Sulzenbacher
Marine Cervera Tison
Ange Pujol
Cendrine Nicoletti
Josette Perrier
Anne Galinier
David Ropartz
Michel Fons
Frédérique Pompeo
Thierry Giardina
Institut des Sciences Moléculaires de Marseille · FRLaboratoire de Chimie Bactérienne · FRArchitecture et Fonction des Macromolécules Biologiques · FRBiopolymères Interactions Assemblages · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

α-Galactosides are non-digestible carbohydrates widely distributed in plants. They are a potential source of energy in our daily food, and their assimilation by microbiota may play a role in obesity. In the intestinal tract, they are degraded by microbial glycosidases, which are often modular enzymes with catalytic domains linked to carbohydrate-binding modules. Here we introduce a bifunctional enzyme from the human intestinal bacterium Ruminococcus gnavus E1, α-galactosidase/sucrose kinase (AgaSK). Sequence analysis showed that AgaSK is composed of two domains: one closely related to α-galactosidases from glycoside hydrolase family GH36 and the other containing a nucleotide-binding motif. Its biochemical characterization showed that AgaSK is able to hydrolyze melibiose and raffinose to galactose and either glucose or sucrose, respectively, and to specifically phosphorylate sucrose on the C6 position of glucose in the presence of ATP. The production of sucrose-6-P directly from raffinose points toward a glycolytic pathway in bacteria, not described so far. The crystal structures of the galactosidase domain in the apo form and in complex with the product shed light onto the reaction and substrate recognition mechanisms and highlight an oligomeric state necessary for efficient substrate binding and suggesting a cross-talk between the galactose and kinase domains.

Indexed as

Metagenomealpha-GalactosidaseAnaerobiosisAnimalsCatalytic DomainCrystallography, X-RayHumansIntestinesModels, MolecularMolecular Sequence DataPhosphotransferases (Alcohol Group Acceptor)Protein MultimerizationProtein Structure, QuaternaryRaffinoseRatsRuminococcusalpha-GalactosidasePhosphotransferases (Alcohol Group Acceptor)RaffinoseSucrose

Identifiers

PMID21931163
PMCPMC3220449
OpenAlexW2036021072

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.