Evidence map›Paper›PMID 21930789›Full record

ArticleMolecular and cellular biology2011

Requirement of rRNA methylation for 80S ribosome assembly on a cohort of cellular internal ribosome entry sites.

Abhijit Basu, Priyanka Das, Sujan Chaudhuri, Elena Bevilacqua, Joel Andrews, Sailen Barik, Maria Hatzoglou, Anton A Komar, Barsanjit Mazumder

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 71 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. METTL5-mediated 18S rRNA mMolecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. The non-coding epitranscriptome in cancer.Briefings in functional genomics · 2021
    Review
  16. Article
  17. Article
  18. Review
  19. The 18S rRNA mEMBO reports · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Abhijit BasuCenter for Gene Regulation in Health and Disease, Department of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, OH 44115, USA.
Priyanka Das
Sujan Chaudhuri
Elena Bevilacqua
Joel Andrews
Sailen Barik
Maria Hatzoglou
Anton A Komar
Barsanjit Mazumder
Cleveland State University · USUniversity of South Alabama · USCase Western Reserve University · USUniversity School · US

Funding

Regulation of Gene Expression During StressR01DK053307 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI HATZOGLOU, MARIA · 1998 to 2021
$9.6M
Translational Control by NutrientsR01DK060596 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI MARIA HATZOGLOU · 2002 to 2026
$6.3M
Translational Control by Osmotically Active SolutesR37DK060596 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI HATZOGLOU, MARIA · 2011 to 2020
$5.3M
Translational Silencing in Monocytes: Role of L13aR01HL079164 · NHLBI · CLEVELAND STATE UNIVERSITY · PI MAZUMDER, BARSANJIT · 2005 to 2019
$4.5M
Training in Cell Signaling and Lung PathobiologyT32HL076125 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI RICH, THOMAS C, STEVENS, TROY · 2004 to 2018
$2.7M
Mechanisms of RNA virus-host interactionR01AI059267 · NIAID · UNIVERSITY OF SOUTH ALABAMA · PI BARIK, SAILEN · 2005 to 2009
$1.2M
NHLBI NIH HHS HL79164NHLBI NIH HHS R01 HL079164NHLBI NIH HHS T32 HL076125NHLBI NIH HHS T32HL076125NIAID NIH HHS AI 059267NIDDK NIH HHS DK60596NIDDK NIH HHS R01 DK053307NIDDK NIH HHS R01 DK060596NIDDK NIH HHS R01-DK53307NIDDK NIH HHS R37 DK060596
6 · The paper itself

Abstract

Protein syntheses mediated by cellular and viral internal ribosome entry sites (IRESs) are believed to have many features in common. Distinct mechanisms for ribosome recruitment and preinitiation complex assembly between the two processes have not been identified thus far. Here we show that the methylation status of rRNA differentially influenced the mechanism of 80S complex formation on IRES elements from the cellular sodium-coupled neutral amino acid transporter 2 (SNAT2) versus the hepatitis C virus mRNA. Translation initiation involves the assembly of the 48S preinitiation complex, followed by joining of the 60S ribosomal subunit and formation of the 80S complex. Abrogation of rRNA methylation did not affect the 48S complex but resulted in impairment of 80S complex assembly on the cellular, but not the viral, IRESs tested. Impairment of 80S complex assembly on the amino acid transporter SNAT2 IRES was rescued by purified 60S subunits containing fully methylated rRNA. We found that rRNA methylation did not affect the activity of any of the viral IRESs tested but affected the activity of numerous cellular IRESs. This work reveals a novel mechanism operating on a cohort of cellular IRESs that involves rRNA methylation for proper 80S complex assembly and efficient translation initiation.

Indexed as

Peptide Chain Initiation, TranslationalRNA Processing, Post-TranscriptionalAmino Acid Transport System ACationic Amino Acid Transporter 1HEK293 CellsHeLa CellsHepacivirusHumansMethylationProtein BiosynthesisProto-Oncogene Proteins c-mycRibosomal ProteinsRibosome SubunitsRibosome Subunits, LargeRibosome Subunits, SmallRNA, MessengerAmino Acid Transport System ACationic Amino Acid Transporter 1MYC protein, humanProto-Oncogene Proteins c-mycRibosomal ProteinsRNA, MessengerRNA, RibosomalRNA, ViralSLC38A2 protein, humanSLC7A1 protein, human

Identifiers

PMID21930789
PMCPMC3209261
OpenAlexW2105855505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.