Evidence map›Paper›PMID 21929791›Full record

ArticleBMC molecular biology2011

A small basic protein from the brz-brb operon is involved in regulation of bop transcription in Halobacterium salinarum.

Valery Tarasov, Rita Schwaiger, Katarina Furtwängler, Mike Dyall-Smith, Dieter Oesterhelt

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  5. Article
  6. Deciphering Pathways for Carotenogenesis in Haloarchaea.Molecules (Basel, Switzerland) · 2020
    Article
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  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 2 countries.

Valery TarasovMax-Planck Institute of Biochemistry, Department of Membrane Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
Rita Schwaiger
Katarina Furtwängler
Mike Dyall-Smith
Dieter Oesterhelt
Charles Sturt University · AUMax Planck Institute of Biochemistry · DEMax Planck Institute of Molecular Plant Physiology · DEMax Planck Society · DEMünchen Klinik Schwabing · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe halophilic archaeon Halobacterium salinarum expresses bacteriorhodopsin, a retinal-protein that allows photosynthetic growth. Transcription of the bop (bacterioopsin) gene is controlled by two transcription factors, Bat and Brz that induce bop when cells are grown anaerobically and under light.

resultsA new gene was identified that is transcribed together with the brz gene that encodes a small basic protein designated as Brb (bacteriorhodopsin-regulating basic protein). The translation activity of the start codon of the brb gene was confirmed by BgaH reporter assays. In vivo site-directed mutagenesis of the brb gene showed that the Brb protein cooperates with Brz in the regulation of bop expression. Using a GFP reporter assay, it was demonstrated that Brb cooperates with both Brz and Bat proteins to activate bop transcription under phototrophic growth conditions.

conclusionsThe activation of the bop promoter was shown to be dependent not only on two major factors, Bat and Brz, but is also tuned by the small basic protein, Brb.

Indexed as

OperonTranscription, GeneticAmino Acid SequenceArchaeal ProteinsBacteriorhodopsinsBase SequenceGene Expression Regulation, ArchaealGenes, ReporterHalobacterium salinarumMolecular Sequence DataMutagenesis, Site-DirectedPromoter Regions, GeneticRNA, Ribosomal, 16SArchaeal Proteinsbacterio-opsinBacteriorhodopsinsRNA, Ribosomal, 16S

Identifiers

PMID21929791
PMCPMC3184054
OpenAlexW2094254939

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.