ArticleProteins2011
Evaluation of residue-residue contact predictions in CASP9.
Article in Proteins, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
31 citing papers in PubMed.
- Contact-Network Phenotyping of the CDK Family Reveals Selective Distal C-Lobe Contact Redistribution by Modern CDK5 Inhibitors and a Quantitative Selectivity Landscape against CDK2 and CDK1.Journal of chemical information and modeling · 2026Article
- PyPropel: a Python-based tool for efficiently processing and characterising protein data.BMC bioinformatics · 2025Article
- GPCRome-wide analysis of G-protein-coupling diversity using a computational biology approach.Nature communications · 2023Article
- Article
- Article
- Assessing the accuracy of contact predictions in CASP13.Proteins · 2019Article
- DNCON2: improved protein contact prediction using two-level deep convolutional neural networks.Bioinformatics (Oxford, England) · 2018Article
- Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age.Proteins · 2018Article
- NeBcon: protein contact map prediction using neural network training coupled with naïve Bayes classifiers.Bioinformatics (Oxford, England) · 2017Article
- OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method.Journal of computational biology : a journal of computational molecular cell biology · 2017Article
- Assessing Predicted Contacts for Building Protein Three-Dimensional Models.Methods in molecular biology (Clifton, N.J.) · 2017Article
- ConEVA: a toolbox for comprehensive assessment of protein contacts.BMC bioinformatics · 2016Article
- New encouraging developments in contact prediction: Assessment of the CASP11 results.Proteins · 2016Article
- Protein Residue Contacts and Prediction Methods.Methods in molecular biology (Clifton, N.J.) · 2016Article
- Article
- Hard Data Analytics Problems Make for Better Data Analysis Algorithms: Bioinformatics as an Example.Big data · 2014Article
- Automated procedure for contact-map-based protein structure reconstruction.The Journal of membrane biology · 2014Article
- A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome.Cellular and molecular life sciences : CMLS · 2014Article
- Sequence-based Gaussian network model for protein dynamics.Bioinformatics (Oxford, England) · 2014Article
- Evaluation of residue-residue contact prediction in CASP10.Proteins · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
Abstract
This work presents the results of the assessment of the intramolecular residue-residue contact predictions submitted to CASP9. The methodology for the assessment does not differ from that used in previous CASPs, with two basic evaluation measures being the precision in recognizing contacts and the difference between the distribution of distances in the subset of predicted contact pairs versus all pairs of residues in the structure. The emphasis is placed on the prediction of long-range contacts (i.e., contacts between residues separated by at least 24 residues along sequence) in target proteins that cannot be easily modeled by homology. Although there is considerable activity in the field, the current analysis reports no discernable progress since CASP8.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.