Evidence map›Paper›PMID 21926990›Full record

ArticleNature cell biology2011

Apicobasal domain identities of expanding tubular membranes depend on glycosphingolipid biosynthesis.

Hongjie Zhang, Nessy Abraham, Liakot A Khan, David H Hall, John T Fleming, Verena Göbel

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it, 139 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. SNX-3 confers lysosomal fusion-competence to sustain basal autophagy.Cellular and molecular life sciences : CMLS · 2026
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  7. Review
  8. Article
  9. Article
  10. Article
  11. The impact ofmicroPublication biology · 2023
    Article
  12. Defining the glucosylceramide population ofFrontiers in physiology · 2023
    Review
  13. Article
  14. Review
  15. Article
  16. Membrane Lipids in Epithelial Polarity: Sorting out the PIPs.Frontiers in cell and developmental biology · 2022
    Review
  17. Review
  18. Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Hongjie ZhangDepartment of Pediatrics, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.
Nessy Abraham
Liakot A Khan
David H Hall
John T Fleming
Verena Göbel
Massachusetts General Hospital · USHarvard University · USAlbert Einstein College of Medicine · US

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
Transgenic CoreP30DK057521 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI FLOREZ, JOSE CARLOS · 2000 to 2019
$31.4M
Center for C elegans AnatomyR24OD010943 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DAVID H. HALL, Nathan Schroeder · 2012 to 2026
$9.6M
CENTER FOR CAENORHABDITIS ELGANS ANATOMYR24RR012596 · NCRR · YESHIVA UNIVERSITY · PI HALL, DAVID H. · 1998 to 2011
$8.0M
ApicalMembrane Modeling in TubulogenesisR01GM078653 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI GOBEL, VERENA · 2006 to 2017
$2.9M
Organ lumen morphogenesis in C. elegansR03HD044589 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI GOBEL, VERENA · 2003 to 2004
$173k
NCRR NIH HHS R24 RR012596NICHD NIH HHS HD044589NICHD NIH HHS R03 HD044589NIDDK NIH HHS DK43351NIDDK NIH HHS DK57521NIDDK NIH HHS P30 DK043351NIDDK NIH HHS P30 DK057521NIGMS NIH HHS GM078653NIGMS NIH HHS R01 GM078653NIH HHS R24 OD010943
6 · The paper itself

Abstract

Metazoan internal organs are assembled from polarized tubular epithelia that must set aside an apical membrane domain as a lumenal surface. In a global Caenorhabditis elegans tubulogenesis screen, interference with several distinct fatty-acid-biosynthetic enzymes transformed a contiguous central intestinal lumen into multiple ectopic lumens. We show that multiple-lumen formation is caused by apicobasal polarity conversion, and demonstrate that in situ modulation of lipid biosynthesis is sufficient to reversibly switch apical domain identities on growing membranes of single post-mitotic cells, shifting lumen positions. Follow-on targeted lipid-biosynthesis pathway screens and functional genetic assays were designed to identify a putative single causative lipid species. They demonstrate that fatty-acid biosynthesis affects polarity through sphingolipid synthesis, and reveal ceramide glucosyltransferases (CGTs) as end-point biosynthetic enzymes in this pathway. Our findings identify glycosphingolipids, CGT products and obligate membrane lipids, as critical determinants of in vivo polarity and indicate that they sort new components to the expanding apical membrane.

Indexed as

Cell PolarityAcetyl-CoA CarboxylaseAlcohol OxidoreductasesAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell EnlargementCell MembraneCoenzyme A LigasesEpithelial CellsGenotypeGlucosyltransferasesGlycosphingolipidsHydroxylationIntestinal MucosaLong-Chain-Fatty-Acid-CoA LigaseAcetyl-CoA CarboxylaseAlcohol OxidoreductasesCaenorhabditis elegans Proteinsceramide glucosyltransferaseCoenzyme A LigasesGlucosyltransferasesGlycosphingolipidsLET-767 protein, C elegansLong-Chain-Fatty-Acid-CoA LigaseSerine C-Palmitoyltransferase

Identifiers

PMID21926990
PMCPMC3249144
OpenAlexW2019308540

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.