Evidence map›Paper›PMID 21926168›Full record

ArticleThe Journal of biological chemistry2011

Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex.

Ryota Hashizume, Yukiko Maki, Kimihiko Mizutani, Nobuyuki Takahashi, Hiroyuki Matsubara, Akiko Sugita, Kimihiko Sato, Shotaro Yamaguchi, Bunzo Mikami

Erratum issuedAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Purified protein glutaminase fromFood chemistry: X · 2024
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Structure of the catalytic domain of the Salmonella virulence factor SseI.Acta crystallographica. Section D, Biological crystallography · 2012
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Ryota HashizumeLaboratory of Applied Structural Biology, Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan.
Yukiko MakiLaboratory of Applied Structural Biology, Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan.
Kimihiko MizutaniLaboratory of Applied Structural Biology, Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan.
Nobuyuki TakahashiLaboratory of Applied Structural Biology, Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan.
Hiroyuki MatsubaraGifu R&D Center, Amano Enzyme Incorporated, 1-6 Technoplaza, Kakamigahara, Gifu 509-0108, Japan.
Akiko SugitaGifu R&D Center, Amano Enzyme Incorporated, 1-6 Technoplaza, Kakamigahara, Gifu 509-0108, Japan.
Kimihiko SatoGifu R&D Center, Amano Enzyme Incorporated, 1-6 Technoplaza, Kakamigahara, Gifu 509-0108, Japan.
Shotaro YamaguchiGifu R&D Center, Amano Enzyme Incorporated, 1-6 Technoplaza, Kakamigahara, Gifu 509-0108, Japan.
Bunzo MikamiLaboratory of Applied Structural Biology, Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan. Electronic address: mikami@kais.kyoto-u.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein glutaminase, which converts a protein glutamine residue to a glutamate residue, is expected to be useful as a new food-processing enzyme. The crystal structures of the mature and pro forms of the enzyme were refined at 1.15 and 1.73 Å resolution, respectively. The overall structure of the mature enzyme has a weak homology to the core domain of human transglutaminase-2. The catalytic triad (Cys-His-Asp) common to transglutaminases and cysteine proteases is located in the bottom of the active site pocket. The structure of the recombinant pro form shows that a short loop between S2 and S3 in the proregion covers and interacts with the active site of the mature region, mimicking the protein substrate of the enzyme. Ala-47 is located just above the pocket of the active site. Two mutant structures (A47Q-1 and A47Q-2) refined at 1.5 Å resolution were found to correspond to the enzyme-substrate complex and an S-acyl intermediate. Based on these structures, the catalytic mechanism of protein glutaminase is proposed.

Indexed as

Amino Acid SequenceCatalysisCatalytic DomainChryseobacteriumCrystallizationCrystallography, X-RayCysteine ProteasesGlutaminaseGlutamineMolecular Sequence DataMutagenesis, Site-DirectedMutationProlineProtein BindingProtein ConformationTransglutaminasesCysteine ProteasesGlutaminaseGlutamineProlineTransglutaminases

Identifiers

PMID21926168
PMCPMC3207460

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.