Evidence map›Paper›PMID 21926093›Full record

ArticleJournal of experimental botany2012

Plastid signalling under multiple conditions is accompanied by a common defect in RNA editing in plastids.

Tomohiro Kakizaki, Fumiko Yazu, Katsuhiro Nakayama, Yasuko Ito-Inaba, Takehito Inaba

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

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  9. Review
  10. Retrograde signals from endosymbiotic organelles: a common control principle in eukaryotic cells.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  11. GUN1 interacts with MORF2 to regulate plastid RNA editing during retrograde signaling.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Salt stress affects mRNA editing in soybean chloroplasts.Genetics and molecular biology · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Tomohiro KakizakiNational Institute of Vegetable and Tea Science, 360 Kusawa, Ano, Tsu, Mie 514-2392, Japan.
Fumiko Yazu
Katsuhiro Nakayama
Yasuko Ito-Inaba
Takehito Inaba
University of Miyazaki · JPInstitute of Vegetable and Floriculture Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retrograde signalling from the plastid to the nucleus, also known as plastid signalling, plays a key role in coordinating nuclear gene expression with the functional state of plastids. Inhibitors that cause plastid dysfunction have been suggested to generate specific plastid signals related to their modes of action. However, the molecules involved in plastid signalling remain to be identified. Genetic studies indicate that the plastid-localized pentatricopeptide repeat protein GUN1 mediates signalling under several plastid signalling-related conditions. To elucidate further the nature of plastid signals, investigations were carried out to determine whether different plastid signal-inducing treatments had similar effects on plastids and on nuclear gene expression. It is demonstrated that norflurazon and lincomycin treatments and the plastid protein import2-2 (ppi2-2) mutation, which causes a defect in plastid protein import, all resulted in similar changes at the gene expression level. Furthermore, it was observed that these three treatments resulted in defective RNA editing in plastids. This defect in RNA editing was not a secondary effect of down-regulation of pentatricopeptide repeat protein gene expression in the nucleus. The results indicate that these three treatments, which are known to induce plastid signals, affect RNA editing in plastids, suggesting an unprecedented link between plastid signalling and RNA editing.

Indexed as

PlastidsSignal TransductionArabidopsisArabidopsis ProteinsDNA-Binding ProteinsGenes, PlantMutationReal-Time Polymerase Chain ReactionTranscription FactorsTranscription, GeneticArabidopsis ProteinsDNA-Binding ProteinsGUN1 protein, ArabidopsisTranscription Factors

Identifiers

PMID21926093
PMCPMC3245456
OpenAlexW2123398236

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.