Evidence map›Paper›PMID 21925499›Full record

ArticleFEBS letters2011

β-Lysine discrimination by lysyl-tRNA synthetase.

Marla S Gilreath, Hervé Roy, Tammy J Bullwinkle, Assaf Katz, William W Navarre, Michael Ibba

Open access · bronzeAbstract read
In one paragraph

Article in FEBS letters, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Expanding the Genetic Code with Lysine Aminoacylation.Journal of the American Chemical Society · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Marla S GilreathOhio State Biochemistry Program, Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Hervé Roy
Tammy J Bullwinkle
Assaf Katz
William W Navarre
Michael Ibba
The Ohio State University · USUniversity of Toronto · CA

Funding

Mechanisms of translational controlR01GM065183 · NIGMS · OHIO STATE UNIVERSITY · PI DUNHAM, CHRISTINE M, FREDRICK, KURT L · 2003 to 2020
$4.9M
CIHR MOP-86683CIHR MSH-87729NIGMS NIH HHS GM65183NIGMS NIH HHS R01 GM065183
6 · The paper itself

Abstract

Elongation factor P is modified with (R)-β-lysine by the lysyl-tRNA synthetase (LysRS) paralog PoxA. PoxA specificity is orthogonal to LysRS, despite their high similarity. To investigate α- and β-lysine recognition by LysRS and PoxA, amino acid replacements were made in the LysRS active site guided by the PoxA structure. A233S LysRS behaved as wild type with α-lysine, while the G469A and A233S/G469A variants decreased stable α-lysyl-adenylate formation. A233S LysRS recognized β-lysine better than wildtype, suggesting a role for this residue in discriminating α- and β-amino acids. Both enantiomers of β-lysine were substrates for tRNA aminoacylation by LysRS, which, together with the relaxed specificity of the A233S variant, suggest a possible means to develop systems for in vivo co-translational insertion of β-amino acids.

Indexed as

Amino Acid SubstitutionBacillus cereusBacterial ProteinsLysineLysine-tRNA LigaseMutation, MissensePeptide Elongation FactorsBacterial Proteinsfactor EF-PLysineLysine-tRNA LigasePeptide Elongation Factors

Identifiers

PMID21925499
PMCPMC3196068
OpenAlexW2079094410

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.