Evidence map›Paper›PMID 21925383›Full record

ArticleMolecular cell2011

RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD.

Lulu Huang, Chih-Hong Lou, Waikin Chan, Eleen Y Shum, Ada Shao, Erica Stone, Rachid Karam, Hye-Won Song, Miles F Wilkinson

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 236 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lulu HuangDepartment of Reproductive Medicine, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Chih-Hong Lou
Waikin Chan
Eleen Y Shum
Ada Shao
Erica Stone
Rachid Karam
Hye-Won Song
Miles F Wilkinson
University of California, San Diego · USThe University of Texas MD Anderson Cancer Center · US

Funding

TCR RNA SurveillanceR01GM058595 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WILKINSON, MILES FROME · 1999 to 2012
$4.1M
NIGMS NIH HHS R01 GM058595
6 · The paper itself

Abstract

Nonsense-mediated mRNA decay (NMD) is a conserved RNA decay pathway that degrades aberrant mRNAs and directly regulates many normal mRNAs. This dual role for NMD raises the possibility that its magnitude is buffered to prevent the potentially catastrophic alterations in gene expression that would otherwise occur if NMD were perturbed by environmental or genetic insults. In support of this, here we report the existence of a negative feedback regulatory network that directly acts on seven NMD factors. Feedback regulation is conferred by different branches of the NMD pathway in a cell type-specific and developmentally regulated manner. We identify feedback-regulated NMD factors that are rate limiting for NMD and demonstrate that reversal of feedback regulation in response to NMD perturbation is crucial for maintaining NMD. Together, our results suggest the existence of an intricate feedback network that maintains both RNA surveillance and the homeostasis of normal gene expression in mammalian cells.

Indexed as

RNA StabilityActivating Transcription Factor 3Blotting, WesternFeedback, PhysiologicalGene Expression RegulationHeLa CellsHomeostasisHumansRNA HelicasesRNA InterferenceRNA, MessengerTrans-ActivatorsActivating Transcription Factor 3ATF3 protein, humanRNA HelicasesRNA, MessengerTrans-ActivatorsUPF1 protein, human

Identifiers

PMID21925383
PMCPMC4281029
OpenAlexW2053499869

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.